RetrogeneDB ID: | retro_ttru_453 | ||
Retrocopy location | Organism: | Dolphin (Tursiops truncatus) | |
| Coordinates: | GeneScaffold_2337:306983..307550(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NKIRAS2 | ||
| Ensembl ID: | ENSTTRG00000006623 | ||
| Aliases: | None | ||
| Description: | NFKB inhibitor interacting Ras-like 2 [Source:HGNC Symbol;Acc:17898] |
Retrocopy-Parental alignment summary:
>retro_ttru_453
ATGGGAAAGGTCTGTAAGGTTGTGGTTTGTGGCTTGTTATCTGTGGGGAAAATGGCGATTTTGGAGTAGCTCCTTTATGG
GAATCATCCTATTAGAATGGAGGACTGTGAAACAATGGAAGATATGTATATGGCTTCAGTGGAAACAGATCGGGGAGTCA
AGGAACAGGTACATCTTTACGACACCAGGGGCCTACAGGAAGGTGTGGAGCTTCCAAAGCATTATTTTTCATTTGCCGGT
GGCTTCGTTTTTGTGTACAGTGTGAATAACTTTGAATCCTTTCAGAGAGTGGAGCTTCTGAAGAAAGAAATTGATCGGTT
CAAAGACAAAAAAGAGGTGGCAATTGTTGTGTTAGGAAACAAAACTGACCTTTCTGAGCAGAGACAAGCGGCCGCCGAAG
TGGCACAGCAGTGGGCCAGGAGCGAGAAGGTGCCTCTGTGGGAGGTGACGGTCACAGACCTCAAGACCCTGATCGAGCCC
TTAACCCTGCTAGCCCGCAAACTCTCCCAGCCCCAGAACAAAGCGAGCTTCCCTCTGCCTGGGAGGAGAAGCAAAGGCAA
CTACAGC
ORF - retro_ttru_453 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.49 % |
| Parental protein coverage: | 98.43 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFYDTRGLRDGAE |
| MGK.CKVVVCG..SVGK..ILE.LLYGNH....E..ET.ED.Y..S.ETDRGV.EQV..YDTRGL..G.E | |
| Retrocopy | MGKVCKVVVCGLLSVGKMAILE*LLYGNHPIRMEDCETMEDMYMASVETDRGVKEQVHLYDTRGLQEGVE |
| Parental | LPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGNKCDLQEQRRVDPDVAQHWAK |
| LP.H.FS...G.V.VYS....ESFQRVELLKKEID..KDKKEV.IVVLGNK.DL.EQR.....VAQ.WA. | |
| Retrocopy | LPKHYFSFAGGFVFVYSVNNFESFQRVELLKKEIDRFKDKKEVAIVVLGNKTDLSEQRQAAAEVAQQWAR |
| Parental | SEKVKLWEVSVADRRSLLEPFVYLASRMTQPQSKSAFPL-SRKNKGSGS |
| SEKV.LWEV.V.D...L.EP...LA....QPQ.K..FPL..R..KG..S | |
| Retrocopy | SEKVPLWEVTVTDLKTLIEPLTLLARKLSQPQNKASFPLPGRRSKGNYS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_453 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_453 was not experimentally validated.
Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ictidomys tridecemlineatus | ENSSTOG00000006159 | 1 retrocopy | |
| Tursiops truncatus | ENSTTRG00000006623 | 1 retrocopy |
retro_ttru_453 ,
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