RetrogeneDB ID: | retro_itri_958 | ||
Retrocopy location | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
| Coordinates: | JH393349.1:1540310..1540710(-) | ||
| Located in intron of: | ENSSTOG00000006263 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NKIRAS2 | ||
| Ensembl ID: | ENSSTOG00000006159 | ||
| Aliases: | None | ||
| Description: | NFKB inhibitor interacting Ras-like 2 [Source:HGNC Symbol;Acc:17898] |
Retrocopy-Parental alignment summary:
>retro_itri_958
AAGAGCTGCAAGAGATGCATGTGTGGTCAGGCATCTGTGGGTAAAATTTCAATCCTAGAACAGCTCCTGTATGGGAATCA
TGTAGTGGGTTCTGAGATGACTGAAATCCAGGAAGACACTTACGTAGGTTCTACTGAGATAGACCGGGAAGTGCGGGAGC
AGGTGCATTCCTATAATACCTAGGGGGCTTCAAAATGGGGCCAAGCTGCCACAGCCCTGCTTCTCCTGCACTAATGGCCA
CATCCTGGTCTACAGCACAGATGGCTGAGAGTCCTTTCAGCATGTGGAGCTACTCAAGAAGGAGACTGACAAATCTAAGG
ATAAGACGGAGATCACCACTGTGGTCCTGGGCAACATGTGTGACTTACAGGAACAGCGGCGTGTAGACCCAGATATGGCT
ORF - retro_itri_958 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 76.87 % |
| Parental protein coverage: | 69.63 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | KSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFYDT-RGLRDGAEL |
| KSCK...CGQASVGK.SILEQLLYGNHVVGSEM.E.QED.YVGS.E.DR.VREQV..Y.T.RGL..GA.L | |
| Retrocopy | KSCKRCMCGQASVGKISILEQLLYGNHVVGSEMTEIQEDTYVGSTEIDREVREQVHSYNT>RGLQNGAKL |
| Parental | PRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGNKCDLQEQRRVDPDVA |
| P..CFSCT.G..LVYSTD..ESFQ.VELLKKE.DKSKDK.E.T.VVLGN.CDLQEQRRVDPD.A | |
| Retrocopy | PQPCFSCTNGHILVYSTDG*ESFQHVELLKKETDKSKDKTEITTVVLGNMCDLQEQRRVDPDMA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_958 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_958 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ictidomys tridecemlineatus | ENSSTOG00000006159 | 1 retrocopy |
retro_itri_958 ,
|
| Tursiops truncatus | ENSTTRG00000006623 | 1 retrocopy |