RetrogeneDB ID: retro_ttru_360

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_1982:24469..25135(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EPT1
• Ensembl ID: ENSTTRG00000010232
• Aliases: None
• Description: ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific) [Source:HGNC Symbol;Acc:29361]

Sequence

>retro_ttru_360
TCCTCTGTGGCTCTGAAGTTCCCTACTTGGCTGACTCCAAATCTGATAAATTTTTCTGGCTTTCTGCTGTTTGTGTTCAA
TTTTCTGCTTATGGCATACTTTGATTCCGACTTTTATGCTTCAGTACCAGGTCACAGGCATGTACCTGATTGGGTTTGGA
TTGTAGTGGGCATCCTCAACTTCGTAGCCTGCACTCTAGATGGTGTGGATGGAAAGCAAGCCTGTAGAACCAATTCCAGC
ACCCCATTAGGGGAGCTTGTTGACCATGGCCTGGATAGTTGGTCATGTGTTTACTTTGTTGTAACTGTGTATTCCATTTT
TGGACGAGGATCATCTGGTGTCAGTGTTTTTGTCCTTCATCTCCTGCTCTGGGTAGTTTTATTTTCTTTCATCCTGTCCC
ACTGGGAAAAGTATAACACAGGGATTCTTTTCCTGCCATGGGGATATGACGTTAGCCAGGTGACTATTTCTTTTGTCTAC
ATAGTGACTGCGATTGTGGGAGTTGAGGCCTGGTATGAACCTTTCCTTTTTAATTTCTTTTATAGAGACCTATTCACTGC
AATGATCATTGGTTGTGCATTATGCATGACTCTTCCAATGAGTTTATTAAACTTTTTCAGAAGCTATAAAAATAACACCT
TGAAACACAATTTAGTCTATGAAGCT

Alignment

ORF - retro_ttru_360 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.84 %
• Parental protein coverage: 55.53 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NTVXXVFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVD
          ..V...FPTWL.PNLI.FSGFLL.VFNFLLMAYFD.DFYAS.PGH.HVPDWVWIVVGILNFVA.TLDGVD
Retrocopy SSVALKFPTWLTPNLINFSGFLLFVFNFLLMAYFDSDFYASVPGHRHVPDWVWIVVGILNFVACTLDGVD

Parental  GKQR-RTNSSTPVGEPF-HG-DS-SCVYFVVTVYS-FGRGSSGVSVD-LYLLLWVVLFSFILSHWEKYNT
          GKQ..RTNSSTP.GE...HG.DS.SCVYFVVTVYS.FGRGSSGVSV..L.LLLWVVLFSFILSHWEKYNT
Retrocopy GKQACRTNSSTPLGELVDHGLDSWSCVYFVVTVYSIFGRGSSGVSVFVLHLLLWVVLFSFILSHWEKYNT

Parental  GILFLPWGYDVSQVTISFVYIVTAIVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSLLNFFRSYK
          GILFLPWGYDVSQVTISFVYIVTAIVGVEAWYEPFLFNF.YRDLFTAMIIGCALC.TLPMSLLNFFRSYK
Retrocopy GILFLPWGYDVSQVTISFVYIVTAIVGVEAWYEPFLFNFFYRDLFTAMIIGCALCMTLPMSLLNFFRSYK

Parental  NNTLKHNSVYEA
          NNTLKHN.VYEA
Retrocopy NNTLKHNLVYEA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_360 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_360 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000005453	1 retrocopy	retro_ogar_3321,
Tursiops truncatus	ENSTTRG00000010232	1 retrocopy	retro_ttru_360 ,