RetrogeneDB ID: retro_ogar_3321

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873778.1:1073496..1074360(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EPT1
• Ensembl ID: ENSOGAG00000005453
• Aliases: None
• Description: ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific) [Source:HGNC Symbol;Acc:29361]

Sequence

>retro_ogar_3321
TTGTATTGGGCATCCTCAACTTTACAGCCTAGACTGGATGCACAGCAGGCTCACAGAACCAATTCCAGCATTCCCAAAGG
GGAACTTTTGGATCATGGCCTGGATAGTTGGTCATGTGTTTACTTTGCTATAACTGTGGAGTGCATCTTTGGACAGGATC
AGCTAGTGCCAGTGTTTTTATTCTTTACATCTTGCTATGGGCAGTTTTGTTTTCTTTTATCCTGTCCCACTGGGAGAAGT
AGAACAAAAGGATACTTTTCCTATAATGGAGATATGACATTAGCCAGGTGACAATTTCTTTTGTCTACATAGTGACTGTG
GTTGTGGGAGTTTAAGCCTAGTATGAACCTTTCCTGTTCAATGTCTTATATAGAGATCTATTCACTGCAATGATTATTGG
TTGTACAATATGTGTGTTTCTTCCAATGAGTTCATTAAACTTTATCAGAAGCTATAAAAATAACACTTTGAAACACAATT
CAGTCTATGAAGCTATGGTTCCCTTCTTTCTCCATGTTTGCTATTCATTTTGTCTATAGCATGTACCCTCTGGAGGCCTT
CAGATATTTTAGAGGCACATCCTAGAGCATTTTACTTTGTGGTTGAAACAGCCTTTGCCAACATCACATGTCAGTTGATC
ATTTGCCAAATGAGCAGTACCTGTTTTCCAATTTGAATTGCTTGCTGGTTCCTCTTTTTTTAGTTGTCTTGGTGGTAAAC
TCAGGAGTAGCCTCTTCCATCGATAATAGTCTCCTGTATACATTAGCAGTCACTTTCACTGCCCATTGTGGAGTACAAGT
GGTAAATCAGCTAAGCAACCATTTCCAGATTTATCCCCTCTCTTTGAAGAAACCAAACTCAGAT

Alignment

ORF - retro_ogar_3321 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.54 %
• Parental protein coverage: 79.13 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  LNFVAYTLADGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGR-GSTGVSAFVLYLLLWVV
          L.....TL....D..QA.RTNSS.P.GEL.DHGLDSWSCVYF..TV..IFG..GS...S.F.LY.LLW.V
Retrocopy LYWASSTLQPRLDAQQAHRTNSSIPKGELLDHGLDSWSCVYFAITVECIFGQ<GSASASVFILYILLWAV

Parental  LFSFILSHWEKYNTGILFLPWGYDISQVTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCV
          LFSFILSHWEK.N..ILFL.W.YDISQVTISFVYIVT.VVGV.A.YEPFLFN.LYRDLFTAMIIGC..CV
Retrocopy LFSFILSHWEK*NKRILFL*WRYDISQVTISFVYIVTVVVGV*A*YEPFLFNVLYRDLFTAMIIGCTICV

Parental  TLPMSLLNFFRSYKNNTLKHNSVCEAMVPFF-SPCLLFILSTAWILCSPSDILEMHPRIFYFMVGTAFAN
          .LPMS.LNF.RSYKNNTLKHNSV.EAMVPFF.SPCLLFILS.A..L..PSDILE.HPR.FYF.V.TAFAN
Retrocopy FLPMSSLNFIRSYKNNTLKHNSVYEAMVPFF<SPCLLFILSIACTLWRPSDILEAHPRAFYFVVETAFAN

Parental  ITCQLIVCQMSNTRCP-TLNWLLAPLFFVVLAVNSGFAASFEDGLLYILAAAFTVAHIHYGVRVVKQLSS
          ITCQLI.CQMS.T..P..LN.LL.PLF.VVL.VNSG.A.S....LLY.LA..FT....H.GV.VV.QLS.
Retrocopy ITCQLIICQMSSTCFP<NLNCLLVPLFLVVLVVNSGVASSIDNSLLYTLAVTFTA---HCGVQVVNQLSN

Parental  HFQIYPFSLKKPNSD
          HFQIYP.SLKKPNSD
Retrocopy HFQIYPLSLKKPNSD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3321 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000005453	1 retrocopy	retro_ogar_3321 ,
Otolemur garnettii	ENSOGAG00000010799	1 retrocopy	retro_ogar_2444,
Tursiops truncatus	ENSTTRG00000010232	1 retrocopy	retro_ttru_360,