RetrogeneDB ID: | retro_ttru_1869 | ||
Retrocopy location | Organism: | Dolphin (Tursiops truncatus) | |
| Coordinates: | scaffold_96360:19020..19343(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | SH3BGR | ||
| Ensembl ID: | ENSTTRG00000015375 | ||
| Aliases: | None | ||
| Description: | SH3 domain binding glutamic acid-rich protein [Source:HGNC Symbol;Acc:10822] |
Retrocopy-Parental alignment summary:
>retro_ttru_1869
AGGATAGTGATCCGTATGTACATCGCACCTTCCTCTGGCTCCATGGTGATCAAGAAGAAACAGCAAGATGCGCTTGATTT
CTTAGAAGCTAACAAAATAGGATTTGAAGAAAAAGATATTGCAGCCAGTGAAGACAACTGGAAGTGGATGAGAGAAAATG
TTCCTGAAAAGTCGACCAGCCAAAGGGTACCCCCTGCCACCTGAGATTTTCAATGAAAGTCAGTACCATGGCGACTAAGA
TGTCTTCTTTGAAGCCAGAGAAAATAATGCAGTGTTTGCCTTTTTTAGGTTTAACAGCCCCACCTGGTTCAAAGCAAGCA
GAA
ORF - retro_ttru_1869 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 60.0 % |
| Parental protein coverage: | 53.5 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | KMVIKVFVT-SSGSIAIRKKQQEVVGFLEANKIDFKEFDIAGDEDNRKWMRENVPGEK-KPQNGIPLPPQ |
| ..VI......SSGS..I.KKQQ....FLEANKI.F.E.DIA..EDN.KWMRENVP.EK..P..G.PLPP. | |
| Retrocopy | RIVIRMYIAPSSGSMVIKKKQQDALDFLEANKIGFEEKDIAASEDNWKWMRENVP-EK>RPAKGYPLPPE |
| Parental | IFNEEQYCGDFDSFFSAKEENIIYS-FLGLAPPPGSKGTE |
| IFNE.QY.GD.D.FF.A.E.N.....FLGL..PPGSK..E | |
| Retrocopy | IFNESQYHGD*DVFFEARENNAVFA>FLGLTAPPGSKQAE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1869 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1869 was not experimentally validated.
Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tursiops truncatus | ENSTTRG00000015375 | 1 retrocopy |
retro_ttru_1869 ,
|
| Tursiops truncatus | ENSTTRG00000017306 | 1 retrocopy |