RetrogeneDB ID: retro_ttru_141

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_1355:67427..67724(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SH3BGRL2
• Ensembl ID: ENSTTRG00000017306
• Aliases: None
• Description: SH3 domain binding glutamic acid-rich protein like 2 [Source:HGNC Symbol;Acc:15567]

Sequence

>retro_ttru_141
GTCGTCCGCGTGTTCACCGCCTCCTCCTCGGGCTTCGTGGCGATAAAGAAGAAGCAGCAGGATGTGGTTAGATTTCTGGA
AGCCAACAAGATAAAGTTTTAGGAGGTGGACGTCACGATGTCAGAAGAGCAGAGGCAGTGGATGTACAAAAACATCCCCC
CGGAGAAGGAGCCTGTTCAGGGCAACCCTCTGCCACCTCAGATATTTAATGGGGACCGATACTGTGCAGATTATGACAGT
TTATTTGAATCCAAGGAAAGCAACACAGTCTTTTCATTCTTAGGCATCAAAGGAAGA

Alignment

ORF - retro_ttru_141 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.86 %
• Parental protein coverage: 92.52 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNIPLEKKPAQGNPLPPQIFN
          V.RVF.ASSSGFVAIKKKQQDVVRFLEANKI.F.EVD.TMSEEQRQWMYKNIP.EK.P.QGNPLPPQIFN
Retrocopy VVRVFTASSSGFVAIKKKQQDVVRFLEANKIKF*EVDVTMSEEQRQWMYKNIPPEKEPVQGNPLPPQIFN

Parental  GNRYCGDYDSFFESKESNTVFSFLGLKSQ
          G.RYC.DYDS.FESKESNTVFSFLG.K..
Retrocopy GDRYCADYDSLFESKESNTVFSFLGIKGR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_141 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_141 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003858	3 retrocopies	retro_chof_1669, retro_chof_2317, retro_chof_682,
Macropus eugenii	ENSMEUG00000007073	1 retrocopy	retro_meug_78,
Tursiops truncatus	ENSTTRG00000015375	1 retrocopy	retro_ttru_1869,
Tursiops truncatus	ENSTTRG00000017306	1 retrocopy	retro_ttru_141 ,