RetrogeneDB ID: retro_ttru_1855

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_94714:25329..25724(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CBR4
• Ensembl ID: ENSTTRG00000000258
• Aliases: None
• Description: carbonyl reductase 4 [Source:HGNC Symbol;Acc:25891]

Sequence

>retro_ttru_1855
GGAGATCACTTGGCATTGAGCTGTGACGTTGCCAAAGAACATGATGTTCAAAATACATTTGAAGAGATAGAGAAAAATTT
AGGTCGAGTTAATTTCTTGGTAAATGCAGCTGGAATTAACAGGGATAACCTCTTAGTAAGGACAAACGCCGAAGATATGC
TATCTCAGCTTCATACTAACCTCTTGGGCTCCGTGCTGACCTGTAGAGCTGCCATGAAAACAATGATTAAACAGCAGACA
GGGTCCATTGTGAATGTGGGAAGTACTGCGGGTGTAAAGGGCAGACTGGCCAGTCCGTGTACAGCGCCAGTAAAGGCGGG
CTAGCTGCGCTCTCACGCGCTCTTGCTAAAGAGGTAGCAAGAAAGAAAATTAGAGCGAATGTAGTTGCACCAGGT

Alignment

ORF - retro_ttru_1855 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.73 %
• Parental protein coverage: 55.7 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GDHLALSCDVAKEYDVQNTFEEIEKNLGRVNFLVNAAGINRDNLLVRTNAEDMLSQLHTNLLGSMLTCRA
          GDHLALSCDVAKE.DVQNTFEEIEKNLGRVNFLVNAAGINRDNLLVRTNAEDMLSQLHTNLLGS.LTCRA
Retrocopy GDHLALSCDVAKEHDVQNTFEEIEKNLGRVNFLVNAAGINRDNLLVRTNAEDMLSQLHTNLLGSVLTCRA

Parental  AVKTMIKQQTGSIVNVGSVVGV-KGSSGQSVYSASKGGLVAFSRALAKEVARKKIRVNVVAPG
          A.KTMIKQQTGSIVNVGS..GV.KG..GQSVYSASKGGL.A.SRALAKEVARKKIR.NVVAPG
Retrocopy AMKTMIKQQTGSIVNVGSTAGV<KGQTGQSVYSASKGGLAALSRALAKEVARKKIRANVVAPG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1855 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1855 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013400	1 retrocopy	retro_amel_1352,
Canis familiaris	ENSCAFG00000007520	1 retrocopy	retro_cfam_1341,
Felis catus	ENSFCAG00000030280	1 retrocopy	retro_fcat_885,
Oryctolagus cuniculus	ENSOCUG00000006446	1 retrocopy	retro_ocun_1883,
Tursiops truncatus	ENSTTRG00000000258	1 retrocopy	retro_ttru_1855 ,