RetrogeneDB ID: retro_ttru_1814

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_92643:23095..23567(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NAA50
• Ensembl ID: ENSTTRG00000009849
• Aliases: None
• Description: N(alpha)-acetyltransferase 50, NatE catalytic subunit [Source:HGNC Symbol;Acc:29533]

Sequence

>retro_ttru_1814
ATGAAAGGGAGCCGGATCGAGCTGAGAGACGTGACACCACATGATATTAAACAGTTGAAGAGATTAAACCAGGTCATCTT
TCCAGTCAGCTCCAATGACAAGTTCTATAAGAATGCGCTGGAGGTTGGCGAGCTAGCAAAACTTGCCTATTTCAATGGTA
TTGCAGTAGGTGCAGTATGCTGTAGGGTGGATCATTCACAGAATCAGAAGGGACTTTACATCGTGACACTAGGATGTCTG
GCACCGTACTGAAGGCTAGGAATAGGAACTAAAATGTTACATCATGTCTTACACATCTGTGAAAAAAGATGGCACTTTTG
ACAACATCTATCTACATGTCCAGATCAGCAATGAGTCTGCAATTGACTTCTACAGAAAGTTTGGCTTTGAGATTATTGAG
ACAAAGAGGAGCTACTGAAGAGGATAGAGCCCGCTGATTGCTCACGTGCTGCAGAAAAACCTCAAAGTCCCT

Alignment

ORF - retro_ttru_1814 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.38 %
• Parental protein coverage: 92.9 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MKGSRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCCRVDHSQNQK
          MKGSRIEL.DVTPH.IKQLKRLNQVIFPVS.NDKFYK..LEVGELAKLAYFN.IAVGAVCCRVDHSQNQK
Retrocopy MKGSRIELRDVTPHDIKQLKRLNQVIFPVSSNDKFYKNALEVGELAKLAYFNGIAVGAVCCRVDHSQNQK

Parental  RLYIMTLGCLAPYRRLGIGTKMLNHVLNICE-KDGTFDNIYLHVQISNESAIDFYRKFGFEIIETKKNY-
          .LYI.TLGCLAPY.RLGIGTKML.HVL.ICE.KDGTFDNIYLHVQISNESAIDFYRKFGFEIIETK..Y.
Retrocopy GLYIVTLGCLAPY*RLGIGTKMLHHVLHICE>KDGTFDNIYLHVQISNESAIDFYRKFGFEIIETKRSY<

Parental  YKRIEPAD-AHVLQKNLKVP
          .KRIEPAD.AHVLQKNLKVP
Retrocopy LKRIEPAD>AHVLQKNLKVP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1814 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1814 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000001027	1 retrocopy	retro_dnov_2574,
Homo sapiens	ENSG00000121579	1 retrocopy	retro_hsap_874,
Nomascus leucogenys	ENSNLEG00000004624	1 retrocopy	retro_nleu_2586,
Otolemur garnettii	ENSOGAG00000011197	1 retrocopy	retro_ogar_157,
Procavia capensis	ENSPCAG00000009780	2 retrocopies	retro_pcap_205, retro_pcap_459,
Sorex araneus	ENSSARG00000004134	1 retrocopy	retro_sara_447,
Ictidomys tridecemlineatus	ENSSTOG00000009438	1 retrocopy	retro_itri_1703,
Tursiops truncatus	ENSTTRG00000009849	3 retrocopies	retro_ttru_1729, retro_ttru_1814 , retro_ttru_948,