RetrogeneDB ID: retro_dnov_2574

Retrocopy location

• Organism: Armadillo (Dasypus novemcinctus)
• Coordinates: scaffold_86921:6249..6571(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSDNOG00000008981
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: NAA50
• Ensembl ID: ENSDNOG00000001027
• Aliases: None
• Description: N(alpha)-acetyltransferase 50, NatE catalytic subunit [Source:HGNC Symbol;Acc:29533]

Sequence

>retro_dnov_2574
CGGATCGAGCTGGGAGATGTGACACCACACAATATTAAACAGTTGAAAAGATTAAACCAGGTCATCTTTCCAGTCAGCTA
CAATGACAAGTTCTATAAGGATGTGCTGGAGGTTGGCGGGCTAGCAAAACTTGCCTACTTCAATGATATTGCAGTAGGTG
CAGTATGCTGTAGGGTGGATCAGTCACAGAATCAGAAGAGACTTTATATCATGACACTAGGATGTCTGGCACCTTACCGA
AGGCTAGGAATAGGAACTAAAATGTTAAATCATGTCTTAAACATCTGTGAAAAAGATGGCACTTTTGACAAATATCTATC
TG

Alignment

ORF - retro_dnov_2574 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.22 %
• Parental protein coverage: 64.85 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  RIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCCRVDHSQNQKRLYI
          RIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVG.LAKLAYFNDIAVGAVCCRVD.SQNQKRLYI
Retrocopy RIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGGLAKLAYFNDIAVGAVCCRVDQSQNQKRLYI

Parental  MTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFD-NIYL
          MTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFD.NIYL
Retrocopy MTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFD>NIYL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP012922_ascending_colon	4.86 RPM	9.92 RPM
SRP012922_cerebellum	2.34 RPM	6.74 RPM
SRP012922_heart	4.41 RPM	5.10 RPM
SRP012922_kidney	4.11 RPM	7.12 RPM
SRP012922_liver	3.72 RPM	4.80 RPM
SRP012922_lung	3.67 RPM	6.57 RPM
SRP012922_quadricep_muscle	21.64 RPM	40.50 RPM
SRP012922_spleen	3.43 RPM	8.70 RPM

ChIP-Seq

Dasypus novemcinctus was not studied using ChIP-Seq data.

EST

Dasypus novemcinctus was not studied using EST data.

TSS

Dasypus novemcinctus was not studied using FANTOM5 data.

Lab

retro_dnov_2574 was not experimentally validated.

Homology

Retrocopy orthology:

Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000001027	1 retrocopy	retro_dnov_2574 ,
Homo sapiens	ENSG00000121579	1 retrocopy	retro_hsap_874,
Nomascus leucogenys	ENSNLEG00000004624	1 retrocopy	retro_nleu_2586,
Otolemur garnettii	ENSOGAG00000011197	1 retrocopy	retro_ogar_157,
Procavia capensis	ENSPCAG00000009780	2 retrocopies	retro_pcap_205, retro_pcap_459,
Sorex araneus	ENSSARG00000004134	1 retrocopy	retro_sara_447,
Ictidomys tridecemlineatus	ENSSTOG00000009438	1 retrocopy	retro_itri_1703,
Tursiops truncatus	ENSTTRG00000009849	3 retrocopies	retro_ttru_1729, retro_ttru_1814, retro_ttru_948,