RetrogeneDB ID: retro_ttru_1697

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_86323:156388..156622(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: COMMD6
• Ensembl ID: ENSTTRG00000003379
• Aliases: None
• Description: COMM domain containing 6 [Source:HGNC Symbol;Acc:24015]

Sequence

>retro_ttru_1697
GCTGCTATGGAGGGGTGTAGCGAGCCACAGCTGGAGGCTAAGGCCAAGGTCACCAACCAGCTAATAGATTTTCAGTGGAA
GCTGGGTATGGCTGTGAGCTCAGACAGCTGCAGATCACTTAAGTATCCTTATGTTGCAGTGATGCTCAAAGTGGCAGATC
ATTCAGGCCAAGTAAAGAACAAATCCTTTGAAATGACAATTCCACAGTTTCAGAATTTCTACAGTTCAAGGAAA

Alignment

ORF - retro_ttru_1697 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.59 %
• Parental protein coverage: 63.41 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ALMEGCSEPQLDAKAKVTNQLIDFQWKLGMAVSSDSCRSLKYPYVAVMLKVADHSGQVKNKSFEMTIPQF
          A.MEGCSEPQL.AKAKVTNQLIDFQWKLGMAVSSDSCRSLKYPYVAVMLKVADHSGQVKNKSFEMTIPQF
Retrocopy AAMEGCSEPQLEAKAKVTNQLIDFQWKLGMAVSSDSCRSLKYPYVAVMLKVADHSGQVKNKSFEMTIPQF

Parental  QNFYRQFK
          QNFY...K
Retrocopy QNFYSSRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1697 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1697 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000011048	1 retrocopy	retro_dord_237,
Erinaceus europaeus	ENSEEUG00000006061	2 retrocopies	retro_eeur_120, retro_eeur_560,
Myotis lucifugus	ENSMLUG00000010697	1 retrocopy	retro_mluc_1927,
Monodelphis domestica	ENSMODG00000000970	3 retrocopies	retro_mdom_111, retro_mdom_147, retro_mdom_76,
Nomascus leucogenys	ENSNLEG00000026952	1 retrocopy	retro_nleu_2240,
Rattus norvegicus	ENSRNOG00000038012	1 retrocopy	retro_rnor_2012,
Tursiops truncatus	ENSTTRG00000003379	2 retrocopies	retro_ttru_1697 , retro_ttru_908,