RetrogeneDB ID: retro_ttru_1263

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_109011:33484..33841(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTTRG00000007154
• Aliases: None
• Description: None

Sequence

>retro_ttru_1263
ATGATGAATGGCCGGCCGGGCCGAGTGCCCTTACAGTTCCTGCCGAATGAGGCCCGGAGCCTGCCGCCGCCCAAGCTAAC
CGACCCGCGGCTCTTCTACGTCGGCTTCTTGGGTTACTGCTCCGACCTGATTGATAGCGCGATCCGGCGGCGGCCGGTGG
TGTCGGCCGGTTTGCATCGCCAGCTTCTATATGTTACTTCCTTTATTTTTGTCGGATATTATCTTTTAAAACGTCAAGAC
TGTATGTGTGCTCTGAGGGACCATGATATGTTTGCATATGTAAAGTCACATCCAGAGGATTTTCCTGAAAAAGATAAGAA
AACTTACGGTAAAATTCTTGAAGAATTCCATCCAGTG

Alignment

ORF - retro_ttru_1263 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.96 %
• Parental protein coverage: 99.17 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MMNGRPGRVPLQFLPNEARSLPPPKLTDPRLFYVGFLGYCSGLIDNAIRRRPVASAGLHRQLLYVTSFIF
          MMNGRPGRVPLQFLPNEARSLPPPKLTDPRLFYVGFLGYCS.LID.AIRRRPV.SAGLHRQLLYVTSFIF
Retrocopy MMNGRPGRVPLQFLPNEARSLPPPKLTDPRLFYVGFLGYCSDLIDSAIRRRPVVSAGLHRQLLYVTSFIF

Parental  VGYYLLKRQDCMCALRDHDMFAYEKSHPEDFPEKDKKTYSKILEEFYPV
          VGYYLLKRQDCMCALRDHDMFAY.KSHPEDFPEKDKKTY.KILEEF.PV
Retrocopy VGYYLLKRQDCMCALRDHDMFAYVKSHPEDFPEKDKKTYGKILEEFHPV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1263 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1263 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000029444	1 retrocopy	retro_fcat_337,
Mus musculus	ENSMUSG00000030647	2 retrocopies	retro_mmus_2851, retro_mmus_687,
Oryctolagus cuniculus	ENSOCUG00000000958	1 retrocopy	retro_ocun_628,
Tursiops truncatus	ENSTTRG00000007154	1 retrocopy	retro_ttru_1263 ,