RetrogeneDB ID: retro_tsyr_871

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_22513:22463..22819(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ATP6V1G2
• Ensembl ID: ENSTSYG00000007314
• Aliases: None
• Description: ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2 [Source:HGNC Symbol;Acc:862]

Sequence

>retro_tsyr_871
ATGGCCAGTCAGTTCCAGGGTATCCAGCAGCTTCTGCAAGCTGAGAAGTGGGTGGCTGAGACGGTGGCAGATGCCAGAAA
AAAGGAAGTCCTGACGACTGAAGCAGGCAAAAGAGGAGGCACAGATGGAGGTTAGAGTAATAACGTAGAGAGCGAGAGCA
GGAATTCCAGCGCAAGCAGCAGGTGGCCATGGGCTCCCAGGGGAACCTGTCGGCTGAGGTGGAGCAGGTTACAAGGTGCC
AGGTGCAGGGTATGCAGAGCTCCCAACAGAGAAACCGAGAGCGTGTCCTGGCCCAACTTCTTGGCATGGTTTGCGACGTC
AGGTCCAAGGTTCGCCCCAACTACTGGATTGTTGCC

Alignment

ORF - retro_tsyr_871 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.5 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MASQSQGIQQLLQAEKRAAEKVADARK-RKARRLKQAKEEAQMEVEQY-RREREQEFQSKQQAAMGSQGN
          MASQ.QGIQQLLQAEK..AE.VADARK.RK..RLKQAKEEAQMEV....RREREQEFQ.KQQ.AMGSQGN
Retrocopy MASQFQGIQQLLQAEKWVAETVADARK>RKS*RLKQAKEEAQMEVRVI>RREREQEFQRKQQVAMGSQGN

Parental  LSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCNVRPQVHPNYRIAA
          LSAEVEQ.TR.QVQGMQSSQQRNRERVLAQLLGMVC.VR..V.PNY.I.A
Retrocopy LSAEVEQVTRCQVQGMQSSQQRNRERVLAQLLGMVCDVRSKVRPNYWIVA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_871 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000000513	1 retrocopy	retro_cfam_794,
Choloepus hoffmanni	ENSCHOG00000000207	1 retrocopy	retro_chof_2408,
Macropus eugenii	ENSMEUG00000008277	1 retrocopy	retro_meug_2002,
Tarsius syrichta	ENSTSYG00000007314	1 retrocopy	retro_tsyr_871 ,
Tarsius syrichta	ENSTSYG00000011474	3 retrocopies	retro_tsyr_1865, retro_tsyr_2141, retro_tsyr_614,