RetrogeneDB ID: retro_tsyr_1683

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_542277:2..976(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FUT8
• Ensembl ID: ENSTSYG00000000574
• Aliases: None
• Description: fucosyltransferase 8 (alpha (1,6) fucosyltransferase) [Source:HGNC Symbol;Acc:4019]

Sequence

>retro_tsyr_1683
GACTGCAGCAAAGCCAAAAATCTGGTGTGTAATATCAACAAAGGCTGTGGCTATGGCTGTCAACTCCATTATGTGGTCTA
CTGCTTCATGATTGCATATGGCACCCAGAGAACACTCATCTTGGAATCTCAGAACTGGCGCTATGCAACTGGTGGATGGG
AGACTGTGTTTAGACCTGTAAGTGAGACATGCACAGACAGATCTGGCATCTCTACTGGACACTGGTCAGGTGAAGTGAAG
GACAAAAATGTGCAAGTGGTCGAACTCCCCATTGTGGACAGCCTTCACCCCGGCCTCCATACTTACCCTTGGCTGTGCCA
GAAGACCTCGCAGACCGACTTGTCCGAGTACATGGTGATCCTGCAGTGTGGTGGGTGTCCCAGTTTGTCAAATACTGGAT
TCGTCCACAGTCTTGGCTAGAAAAAGAAATAGAAGAGGCCACCAAGAAGCTTGGCTTCAAGCATCCAGTTATTGGAGCCC
ATGTCTGACGCACAGACAAAGTGGGAACAGAAGCTGTCTTCCATCCCATCGAGGAGTATATGGTGCATGCTGAAGAACAT
TTTCAGCTGCTCGCACGCAGAATGCAAATAGACAAAAAAAGAGTGTATTTGGCCACAGATGACCCTTCTTTATTAAAGCA
GGCAAAAACAAAGTACCCCAATTATGAATTGATTAGTGATAACTCCATCTCTTGGTCAGCTGGACTGCACAATCGATACA
TAGATAATTCACTTCGGGGTGTGATCCTGGATATACATTTTCTTTCTCAGGCAGACTTTCTAGTGTGTACTTTTTCATCC
CAGGTCTGTCGAGTTGCTTATGAAATCATGCAAACACTGCATCCCGATGCCTCTGCTAACTTCCATTTTCTAGATGACAC
CTACTATTTTGGGGGCCAGAATGCCCACAATCAGATTGCCATTTATCCTCACCAGCCTCGAACTGCAGATGAAATCCCCA
TGGAACCTGGAGAT

Alignment

ORF - retro_tsyr_1683 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.71 %
• Parental protein coverage: 56.62 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DCSKAKKLACNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGI
          DCSKAK.L.CNINKGCGYGCQLH.VVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGI
Retrocopy DCSKAKNLVCNINKGCGYGCQLHYVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGI

Parental  STGHWSGEVKDKNVQVVELPIVDSLHP-RPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYLIRPQPW
          STGHWSGEVKDKNVQVVELPIVDSLHP.RPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKY.IRPQ.W
Retrocopy STGHWSGEVKDKNVQVVELPIVDSLHP<RPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYWIRPQSW

Parental  LEKEIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQIDKKRVYLATDDP
          LEKEIEEATKKLGFKHPVIG.HV.RTDKVGTEA.FHPIEEYMVH.EEHFQLLARRMQIDKKRVYLATDDP
Retrocopy LEKEIEEATKKLGFKHPVIGAHV*RTDKVGTEAVFHPIEEYMVHAEEHFQLLARRMQIDKKRVYLATDDP

Parental  SLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSSQVCRVAYEIMQT
          SLLK.AKTKYPNYE.ISDNSISWSAGLHNRY..NSLRGVILDIHFLSQADFLVCTFSSQVCRVAYEIMQT
Retrocopy SLLKQAKTKYPNYELISDNSISWSAGLHNRYIDNSLRGVILDIHFLSQADFLVCTFSSQVCRVAYEIMQT

Parental  LHPDASANFHFLDDTYYFGGQNAHNQIAIYPHQPRTADEIPMEPGD
          LHPDASANFHFLDDTYYFGGQNAHNQIAIYPHQPRTADEIPMEPGD
Retrocopy LHPDASANFHFLDDTYYFGGQNAHNQIAIYPHQPRTADEIPMEPGD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1683 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000010918	1 retrocopy	retro_etel_33,
Monodelphis domestica	ENSMODG00000009731	1 retrocopy	retro_mdom_92,
Tarsius syrichta	ENSTSYG00000000574	1 retrocopy	retro_tsyr_1683 ,