RetrogeneDB ID: retro_etel_33

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_211870:2450..3338(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000010680
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000010918
• Aliases: None
• Description: None

Sequence

>retro_etel_33
GAAGTGAAGGACAGAGATGTGCAGGTCGTCGAGCTGCCCATCGTGGACAGGCTTGCTCCCCGTCCTCCGTATCTACCCCT
GGCCGTCCCGGAAGACCTGGCAGAGCGCCTCATTCGCGTCCACGGGGACCCTGCAGTGTGGTGGGTGGCCCAGTTTGTCA
AATACTTGATCCGCCCCCAACCTTGGCTGGAAAAGGAAATAGAGGTGGCCACCGAGAAGCTCGGTTTCAAGCATCCGGTG
GTCGGCGTCCACGTCCGACGCACAGACAAAGTGGGAGCAGAAGCAGGCTTCCATCAAATTGAGGAGTACATGGTGCACGT
GGAAGGACATTTTCAGCTTCTGGCGTGCAGGATGCAAGTGGACACAAAGAGAGTGTACTTGGCCACAGACGACCCTTTTT
TATTAAAGGAGGCACAAACAAAGTACCCTGATTATGAATTTATTAGTAATAACTCCATCTCCTGGGCAGCTGGACCACAC
AGTCGATACTCAGAACAGTCCCTGCGGGGGGTGATCCTGGATGTGCACTTTCTCTCCCAGGCTGACTTCCTCGTGTGCAC
CTTCTCATCCCAGGTCTGTCGAGCTGCTTACGAGATCATGCAAACGCTGCATCCCGACGCCTCGGCGAATTTCCACTCTT
TGGACGACATCTACTATTTTGGGGGCCAGGATGCCCACAACCAGGTTGCCCTCTATCCTCACCGTCCTCGAACCACAGGT
GAAATCCCCATGGAGCCGGGAGACATTATCAGTGTGGCTGGAAACCACTGGGATGGCTATTCCAAAGGCGTCAACAGAAA
GCTGAGAAGGATGGGCCTCTATCCCTCCTACAAAGTTCGGGAGAAGATCGAAACAGCCAAGTACCCCACCTATCCCGAGG
CCGAGAAA

Alignment

ORF - retro_etel_33 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.15 %
• Parental protein coverage: 51.48 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EVKDKSVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYLIRPQPWLEKEIEEA
          EVKD..VQVVELPIVD.L.PRPPYLPLAVPEDLA.RL.RVHGDPAVWWV.QFVKYLIRPQPWLEKEIE.A
Retrocopy EVKDRDVQVVELPIVDRLAPRPPYLPLAVPEDLAERLIRVHGDPAVWWVAQFVKYLIRPQPWLEKEIEVA

Parental  TKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRLQVDKRRVYLATDDPSLLKEAKT
          T.KLGFKHPV.GVHVRRTDKVG.EA.FH.IEEYMVHVE.HFQLLA.R.QVD..RVYLATDDP.LLKEA.T
Retrocopy TEKLGFKHPVVGVHVRRTDKVGAEAGFHQIEEYMVHVEGHFQLLACRMQVDTKRVYLATDDPFLLKEAQT

Parental  KYPSYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSSQVCRVAYEIMQTLHPDASAN
          KYP.YEFIS.NSISW.AG.H.RY.E.SLRGVILD.HFLSQADFLVCTFSSQVCR.AYEIMQTLHPDASAN
Retrocopy KYPDYEFISNNSISWAAGPHSRYSEQSLRGVILDVHFLSQADFLVCTFSSQVCRAAYEIMQTLHPDASAN

Parental  FHSLDDIYYFGGQNAHNQIAVYPHQPRTADEIPMEPGDVIGVAGNHWDGYSKGVNRKLGKTGLYPSYKVR
          FHSLDDIYYFGGQ.AHNQ.A.YPH.PRT..EIPMEPGD.I.VAGNHWDGYSKGVNRKL...GLYPSYKVR
Retrocopy FHSLDDIYYFGGQDAHNQVALYPHRPRTTGEIPMEPGDIISVAGNHWDGYSKGVNRKLRRMGLYPSYKVR

Parental  EKIETVKYPTYPEAEK
          EKIET.KYPTYPEAEK
Retrocopy EKIETAKYPTYPEAEK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_33 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000010918	1 retrocopy	retro_etel_33 ,
Monodelphis domestica	ENSMODG00000009731	1 retrocopy	retro_mdom_92,
Tarsius syrichta	ENSTSYG00000000574	1 retrocopy	retro_tsyr_1683,