RetrogeneDB ID: retro_tsyr_1021

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_27760:3578..4434(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZNF512
• Ensembl ID: ENSTSYG00000006511
• Aliases: None
• Description: zinc finger protein 512 [Source:HGNC Symbol;Acc:29380]

Sequence

>retro_tsyr_1021
AAGAGACTGGGTAAGCTCAGGTGCGTGCGTGAGAGTTGCTCACAAATTGCGAGACCATACGCATCGAAGGCTGGACTTGC
ATATCACCTGAGGTCAGAGCACGGGCCTATCTTCTTTCCAGAGTCAGGACAGGCAGAGCACTTGAAGATGAGCCTGGCGC
CAAAGAGTGGGGACCGAGTTAAGAGATGGTCTGCCAAGATAGCTGCGTATCACCTGCAGGAACTGGCCTCTGCGGAGCTG
GCCAAGGAGTGGCCTAAGAGGAAGGTGCCTCAGGACCCGGTGCCTGATGACCGGAAGTTAAAATATACCCGCCCTGGGCT
GCCTACCTGCAGCCAGGAAGTACTACACAAATGGAAGTTAGATATCAAGAAGTACCATCCCATTCGGTGACCTAACCAGG
ATTATGAGGCTGTCTACAGTAGTGTATCTGGCCTTAAAGCTCACCTGGGCTCTTGTCTATTGGGAAATTTTGCGGCTGGA
AAATCCAAGTGTCTTCTATGCCAGAAAGAATTTGGGTCAGAGAGTGGTGTCAAGTGTCACATCAGTTCTCTCCATGCTGA
GGACTGGTTCGTTGTAAACCCTGCAACCACCAAAAGCATTCAAAAGGTGAGGAAGATGAAGCAGCAGCAGCAGAAGAAAG
GCGGAGCAGCAGCACCAGAGCCAAAGGCCCCTGTGAAGACAGCAGCGGCCTAGCATGGAGCCTTCTGAGGCAGAGCTGAG
TCTTACAGCAGGCAAGGATCAGAGGAGGACTCAGGACCTGGGAGTGTCAAGCTCCTGCAAGGAACCACAGCAGGAGCCAG
TGCCCGCGCTCCAGAAAGTAAAGCCCCCAAAGGCTAACCCTAAACGAGCAAAGAAA

Alignment

ORF - retro_tsyr_1021 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.16 %
• Parental protein coverage: 53.83 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KGAAELEKMTLKCHHCEKPYRSKAGLAYHLRSEHGPIFFPESGQTECLKEMSLEPKSGGRVKRRSAKIAV
          K....L......C.....PY.SKAGLAYHLRSEHGPIFFPESGQ.E.LK.MSL.PKSG.RVKR.SAKIA.
Retrocopy KRLGKLRCVRESCSQIARPYASKAGLAYHLRSEHGPIFFPESGQAEHLK-MSLAPKSGDRVKRWSAKIAA

Parental  YHLQELASAELAKEWPKRKVLQDLVPDDRKLKYTRPGLPTFSQEVLHKWKLDIKKYHRIRCPNQGCEAVY
          YHLQELASAELAKEWPKRKV.QD.VPDDRKLKYTRPGLPT.SQEVLHKWKLDIKKYH.IR.PNQ..EAVY
Retrocopy YHLQELASAELAKEWPKRKVPQDPVPDDRKLKYTRPGLPTCSQEVLHKWKLDIKKYHPIR*PNQDYEAVY

Parental  SSVSGLKAHLGSCPLGNFVAGKYKCLLCQKEFGSESGVKYHINSVHAEDWFVVNPTTTKSFEKLMKIKQR
          SSVSGLKAHLGSC.LGNF.AGK.KCLLCQKEFGSESGVK.HI.S.HAEDWFVVNP.TTKS..K..K.KQ.
Retrocopy SSVSGLKAHLGSCLLGNFAAGKSKCLLCQKEFGSESGVKCHISSLHAEDWFVVNPATTKSIQKVRKMKQQ

Parental  QQE-EERRRQQHQSRRSLRRQQQPSMEPPEAELSLRAGKDQRRNQDLGVSSSCKEPEQEPVPALQKVKPP
          QQ........Q.Q..R.L.RQQ.PSMEP.EAELSL.AGKDQRR.QDLGVSSSCKEP.QEPVPALQKVKPP
Retrocopy QQK>KAEQQHQSQ--RPL*RQQRPSMEPSEAELSLTAGKDQRRTQDLGVSSSCKEPQQEPVPALQKVKPP

Parental  KTNHKRGRE
          K.N.KR...
Retrocopy KANPKRAKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1021 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000003902	1 retrocopy	retro_btau_1331,
Echinops telfairi	ENSETEG00000015916	1 retrocopy	retro_etel_913,
Sorex araneus	ENSSARG00000002246	1 retrocopy	retro_sara_503,
Sarcophilus harrisii	ENSSHAG00000014564	1 retrocopy	retro_shar_808,
Tarsius syrichta	ENSTSYG00000006511	1 retrocopy	retro_tsyr_1021 ,