RetrogeneDB ID: | retro_trub_7 | ||
Retrocopy location | Organism: | Fugu rubripes (Takifugu rubripes) | |
| Coordinates: | scaffold_291:100103..100913(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSTRUG00000001222 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NXPH1 (1 of 2) | ||
| Ensembl ID: | ENSTRUG00000008316 | ||
| Aliases: | None | ||
| Description: | neurexophilin 1 [Source:HGNC Symbol;Acc:20693] |
Retrocopy-Parental alignment summary:
>retro_trub_7
TCAGAAGTGCTGTTTGGTTTATTCTGTTTTTTGTTGTTTTTTTCTTTTTACCAGGTTTCAGGTGGTCAGGCCTCAAAGTC
GGATATCATCAAATCAGGAAGCCCCAAAGCGACCGTAAAGCATATATGGACAGAAAGTAGCAAAGAAATGTCGATCAGTA
GGCTGCTGTCACAGACGCTTCAGGGTAAAGAAAACACCACAGCTTTGGACCTTCGCTACGACACTCCGGAGCCATACTCC
GAGAAGGAACTCTGGGACTGGCTGAGGAACTCCACAGAGTTGCAGGAGTCTAGGTCGAGAACCAAACGGCGGCCAATGGT
CAAGACAGGAAAGTTCAAGAAGATGTTTGGCTGGGGGGACTTCCACTCTAACATCAAGACTGTCAAGCTCAACCTGTTGA
TCACAGGCAAGATCGTGGACCACGGCAATGGCACCTTCAGCGTCTACTTCCGCCACAACTCTACAGGTCAGGGGAACGTG
TCTGTCAGCTTGGTCCCTCCTACCAAGATAGTTGAGTTTGATGTTGCAGCTCAGCAGTCGGTCATTGATGTCAAGGACTC
AAAGTCCTTCAACTGTCGCGTAGAGTATGAAAAGGTGGAGAAAGGTGCCAAGAACACGCTTTGCAACTTTGATCCGTCCA
AGACCTGCTACCAGGAGCAGACCCAGAGCCACGTGTCCTGGCTCTGCTCTAAACCCTTCAAAGTTATCTGCATCTTCATT
TCCTTCTACAGCACTGACTACAAACTGGTGCAGAAAGTGTGCCCAGACTATAATTACCATAGTGACACTCCCTACTTCCC
CTCTGGTTGA
ORF - retro_trub_7 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 68.06 % |
| Parental protein coverage: | 97.01 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LLYILVNYLCRNVTGAGSGTSNLREPLKPK--LKTYWSESSRAFSISRLLAQTLYDKENFTSLDLNYDDA |
| L...L.......V.G.....S.......PK...K..W.ESS...SISRLL.QTL..KEN.T.LDL.YD.. | |
| Retrocopy | LFCFLLFFSFYQVSGGQASKSDIIKSGSPKATVKHIWTESSKEMSISRLLSQTLQGKENTTALDLRYDTP |
| Parental | DSYSKWEQWNRHYNVSSPQSPRSRTKRRPIVKTGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTF |
| ..YS..E.W....N....Q..RSRTKRRP.VKTGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTF | |
| Retrocopy | EPYSEKELWDWLRNSTELQESRSRTKRRPMVKTGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTF |
| Parental | SVYFRHNSTGQGNVSVGLVPPTKAVEFQ-QQEKTALENKETKLFNCRVEYEKVEKGTRNSLCAHDPSQSC |
| SVYFRHNSTGQGNVSV.LVPPTK.VEF...........K..K.FNCRVEYEKVEKG..N.LC..DPS..C | |
| Retrocopy | SVYFRHNSTGQGNVSVSLVPPTKIVEFDVAAQQSVIDVKDSKSFNCRVEYEKVEKGAKNTLCNFDPSKTC |
| Parental | PQEQTQSHISWLCSKPFKVICIFITFYSTDYKLVQKVCPDYNYHSDTPYLPTG |
| .QEQTQSH.SWLCSKPFKVICIFI.FYSTDYKLVQKVCPDYNYHSDTPY.P.G | |
| Retrocopy | YQEQTQSHVSWLCSKPFKVICIFISFYSTDYKLVQKVCPDYNYHSDTPYFPSG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Takifugu rubripes was not studied using RNA-Seq expression data.
Takifugu rubripes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_trub_7 retrocopy.
Takifugu rubripes was not studied using FANTOM5 data.
retro_trub_7 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_trub_7 has 0 orthologous retrocopies within teleost group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Takifugu rubripes | ENSTRUG00000008316 | 1 retrocopy |
retro_trub_7 ,
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