RetrogeneDB ID: | retro_tnig_14 | ||
Retrocopy location | Organism: | Tetraodon (Tetraodon nigroviridis) | |
| Coordinates: | 1:1660801..1661377(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSTNIG00000000346 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | rhogb | ||
| Ensembl ID: | ENSTNIG00000006325 | ||
| Aliases: | None | ||
| Description: | ras homolog gene family, member Gb [Source:ZFIN;Acc:ZDB-GENE-030131-8877] |
Retrocopy-Parental alignment summary:
>retro_tnig_14
ATGCAGACCATAAAGTGTGTGGTGGTTGGTGACGGGGCAGTAGGTAAAACCTGCCTGCTCATCTCATACACGACTAATGC
CTTCCCAGAGGAGTACATACCCACTGTGTTTGACAACTACAGTGCTCAGATGAGCGTCGATGGCCGCACCGTTAGCCTTA
ACCTGTGGGACACAGCTGGCCAGGAGGAATATGACCGCCTGCGTACGCTCTCTTATCCACAAACCAACGTTTTCATCATT
TGCTTTTCCATTGGCAGTCCCTCCTCTCATGCCAATGTCAGACACAAGTGGCATCCCGAGGTGTCTCACCACTGCCCCAA
CGTGCCCATCCTGCTGGTGGGCACCAAGAAGGACCTAAGGGGTGATACCGAGACGGTGAAGAAGTTGAAGGAGCAAGGCC
TGGCTCCCACCACCCACCAGCAGGGCAATGCCTTGGCCAAGCAGATCGGTGCGGTCAAGTACATGGAATGCTCTGCTCTG
CTGCAGGATGGCGTCAAAGAAGTGTTTGCGGAAGCCGTAAGGGCAGTTTTGTATCCGGTAGCAAAAAAGAACCCCAAAAG
ATGCGTGCTGTTGTAA
ORF - retro_tnig_14 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 76.96 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MQSVKCVVVGDGAVGKTCLLISYTTGAFPKEYIPTVFDNYSSQVTIDNRIVSLNLWDTAGQEEYDRLRTL |
| MQ..KCVVVGDGAVGKTCLLISYTT.AFP.EYIPTVFDNYS.Q...D.R.VSLNLWDTAGQEEYDRLRTL | |
| Retrocopy | MQTIKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQMSVDGRTVSLNLWDTAGQEEYDRLRTL |
| Parental | SYPQTNVFIICFAISSPASYENVKHKWHPEVSHHCPDVPILLVGTKSDLRSDPDTQKKLKEQNQTPVTHQ |
| SYPQTNVFIICF.I.SP.S..NV.HKWHPEVSHHCP.VPILLVGTK.DLR.D..T.KKLKEQ...P.THQ | |
| Retrocopy | SYPQTNVFIICFSIGSPSSHANVRHKWHPEVSHHCPNVPILLVGTKKDLRGDTETVKKLKEQGLAPTTHQ |
| Parental | QGAALARQIQAVRYMECSALNQDGIKDVFSEAVRAFLNPQPTVSKRHCVLL |
| QG.ALA.QI.AV.YMECSAL.QDG.K.VF.EAVRA.L.P........CVLL | |
| Retrocopy | QGNALAKQIGAVKYMECSALLQDGVKEVFAEAVRAVLYPVAKKNPKRCVLL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tetraodon nigroviridis was not studied using RNA-Seq expression data.
Tetraodon nigroviridis was not studied using ChIP-Seq data.
Tetraodon nigroviridis was not studied using EST data.
Tetraodon nigroviridis was not studied using FANTOM5 data.
retro_tnig_14 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_tnig_14 has 1 orthologous retrocopies within teleost group .| Species | RetrogeneDB ID |
|---|---|
| Takifugu rubripes | retro_trub_15 |
Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Oreochromis niloticus | ENSONIG00000007414 | 1 retrocopy | |
| Tetraodon nigroviridis | ENSTNIG00000006325 | 1 retrocopy |
retro_tnig_14 ,
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