RetrogeneDB ID: retro_taes_8

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 1A:62390537..62391362(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_1AL_791D3B325
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_7DS_620E0D488
• Aliases: None
• Description: None

Sequence

>retro_taes_8
ATGCCAATGTTTCCATCGCTGGACGTTTCTTGTTCAACTGACCAATCTTTATCTTGTGGTTGTTGTGTGCAGGGAGGCGG
CGCCCCCGAGCCGGACGAAGAGGAGGCGGAGGCGCAGGTGGCGGCGCCGGCGGCGGCGGGGGAGGAGGAGCAGTGGCCGC
AGTGGCTGCGCCCGCTGCTGTCCGCGCGCTTCTTCGCGCAATGCAAGACGCACACCGAGTCGCACCGCAGCGGCGAGTGC
AACATGTTCTGCCTCGACTGCGCCGCCGGCGCGGCCGCCGGCGCGGCGGCGCTGTGCTCGCTGTGCCTCGCGCACGCGCA
CCGCGGCCACCACACCATCCAGATCCGCCGCTCCTCCTACCACGACGTCATCCGGGTGTCGGACATCCAGCGCTTCATGG
ACATCGCCGGCGTGCAGACCTACGTCATCAACAGCGCGCGCGTCGTCTTCCTCAACGAGCGCCCCCAGCAGAAGCAGCCC
GGCAAGGCAGGCGGCGGCGGCGCCGGCAGCGCCAACCTCTGCGAGGTCTGCAGCCGCAGCCTGCTCGACAACTTCCGCTT
CTGCTCCCTCGGCTGCAAGGTCACCGGCTGCTCCTCCGACGGGGGCGGCAACGACAAGGCGAGGACGATGATGCGGGCCA
GCAGGCCCGGCCGCGCCAAGGGCTCGTCAGACTCGGAGGCGGCCTCCTCCTCCTCTCCCCTGCGCAATGCCGGCAGGCAG
AGCTTCACGCCGTCCACGCCGCCGCCGCCGCCGCCCCCAGCGGCCAAGCGGCGCAAGGGCATCCCGCACCGGGCGCCGTT
CGGCAACCTCATCATCGACTACTAG

Alignment

ORF - retro_taes_8 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.72 %
• Parental protein coverage: 69.68 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PGWLEALLGTRFFLACAAHPGSPRN-ECNMFCIDCR----ATPAAFCYYCRSHRHTSHRVIQIRRSSYHD
          P.WL..LL..RFF..C..H..S.R..ECNMFC.DC.....A..AA.C..C..H.H..H..IQIRRSSYHD
Retrocopy PQWLRPLLSARFFAQCKTHTESHRSGECNMFCLDCAAGAAAGAAALCSLCLAHAHRGHHTIQIRRSSYHD

Parental  VVRVTEVEDVLDIAGVQTYVINSARVLFLNERPQPRGAGAAAGKAAASPYNCEICGRALLDPFRFCSLGC
          V.RV.......DIAGVQTYVINSARV.FLNERPQ....G.A.G..A.S...CE.C.R.LLD.FRFCSLGC
Retrocopy VIRVSDIQRFMDIAGVQTYVINSARVVFLNERPQQKQPGKAGGGGAGSANLCEVCSRSLLDNFRFCSLGC

Parental  KLVDTKTHGHGHGHGATVV
          K.......G.G.....T..
Retrocopy KVTGCSSDGGGNDKARTMM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_8 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Hordeum vulgare	MLOC_23439	1 retrocopy	retro_hvul_39,
Triticum aestivum	Traes_7DS_620E0D488	1 retrocopy	retro_taes_8 ,