pgwin88

789betwin

ufabet

pgwin88

baht89

https://rr.lpsh.net/amp

ufabetwin

https://brss.pattani1.go.th/video/

https://sp.moe.go.th/web_sp_68/book/

https://dol-bangkok.com/video/

ufabetwin

okvip

okvip

https://aicode.cyp.ac.th/video/

max77

RetrogeneDB - Retrocopy retro_sita_31 details

RetrogeneDB ID:

retro_sita_31

Retrocopy
location
Organism:Foxtail millet (Setaria italica)
Coordinates:6:35753524..35754370(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:Si015425m.g
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:Si037085m.g
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_sita_31
ATGGCACCACCGCCGGCGACGTCGAGAAGAGGTCCTCTCGTCGTGCCGCTGCTGCTGCTGCTGGCGGCGCTCGACGTCGC
AGGTGCGAGCGGCCACAAGCCCTTGACGCCCGGCGGGCGCCTGGTGCACCACAACCACGGCAAGTTCACGGCCGGCCCCT
GGAAGCCCGCGCACGCCACCTTCTACGGCGGGCGCGACGGCTCCGACACGACGGCGGGCGCGTGCGGGTACAAGGACACG
CGGGCGGAGGGGTACGGCGTGCAGACGGTGGCGGTGAGCACGGTGCTGTTCGGCGACGGCGCGGCGTGCGGCGGATGCTA
CGAGGTGCGGTGCGTGGACAGCCCCCACGGCTGCAAGGCGGCGGCGGCGGCGCCGCTGGTGGTGACGGCGACGAACCTGT
GCCCGCCCAACTACCAGCAGTCGAGCGACAACGGCGGGTGGTGCAACCCGCCGCGGGAGCACTTCGACCTGAGCATGCCG
GCGTTCCTGCAGATCGCGGAGGAGAAGGCCGGGATCGTGCCCATCTCCTACCGGCGGGTGGCGTGCGTGAAGCAGGGCGG
CATCCGCTACACCATCACCGGGAACAGGTACTTCAACATGGTGATGGTGACCAACGTGGGCGGCGCCGGCGACCTGGCGG
CGGTGTCGGTGAAGGGGAGCAAGCGCGTCAAGTGGACGGAGCTGAAGCGCAACTGGGGGCAGGTGTGGCAGACCGGGGAA
GACCTCACCGGAGAGTCGCTGACGTTCCGGCTGATGACCAGCGACCACCGCAAGGCCACATCCTGGCACGTCCTCCCCAC
CAACTGGCAGTTCGGCGTCACCTACGAGGCGACCAAGAACTTCTAG

ORF - retro_sita_31 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 56.36 %
Parental protein coverage: 89.31 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalGVYGGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNEGQSCGACFEIKCENQPG
G....G.W..AHATFYGG.D.S.T..GACGY......GYGV...A.ST.LF..G..CG.C.E..C...P.
RetrocopyGKFTAGPWKPAHATFYGGRDGSDTTAGACGYKDTRAEGYGVQTVAVSTVLFGDGAACGGCYEVRCVDSPH
ParentalWRWCHPGSPSILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKS
........P...VTATN.CPPNY...SD.GGWCNPPR.HFDL.MP.FL.IAE..AGIVP.SYRRV.C.K.
RetrocopyGCKAAAAAP-LVVTATNLCPPNYQQSSDNGGWCNPPREHFDLSMPAFLQIAEEKAGIVPISYRRVACVKQ
ParentalGGIRFTINGFRYFNLVLITNVAGAGDIVRASVKGS-GTGWLPMSRNWGQNWQSNAILVGDALSFRVTGSD
GGIR.TI.G.RYFN.V..TNV.GAGD....SVKGS....W....RNWGQ.WQ....L.G..L.FR...SD
RetrocopyGGIRYTITGNRYFNMVMVTNVGGAGDLAAVSVKGSKRVKWTELKRNWGQVWQTGEDLTGESLTFRLMTSD
ParentalRRTSTSWNAAPRNWQFGQTFEG-KNF
.R..TSW...P.NWQFG.T.E..KNF
RetrocopyHRKATSWHVLPTNWQFGVTYEATKNF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Setaria italica was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Setaria italica was not studied using ChIP-Seq data.

EST - click to see more details

Setaria italica was not studied using EST data.

TSS - click to see more details

Setaria italica was not studied using FANTOM5 data.

Lab - click to see more details

retro_sita_31 was not experimentally validated.

Retrocopy orthology:
Setaria italica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Setaria italica Si037085m.g 1 retrocopy
retro_sita_31 ,


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