pgwin88

789betwin

ufabet

pgwin88

baht89

https://rr.lpsh.net/amp

ufabetwin

https://brss.pattani1.go.th/video/

https://sp.moe.go.th/web_sp_68/book/

https://dol-bangkok.com/video/

ufabetwin

okvip

okvip

https://aicode.cyp.ac.th/video/

max77

RetrogeneDB - Retrocopy retro_sita_1 details

RetrogeneDB ID:

retro_sita_1

Retrocopy
location
Organism:Foxtail millet (Setaria italica)
Coordinates:2:42753265..42754669(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:Si031920m.g
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:Si032233m.g
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_sita_1
ATGGCTTCGCGCTCGCTCCTCGCCACGGTTTGCCTGCTGCTCCTAACGCTGCTTGGCGGCACCCTCGTCGAAGCACGTCC
AGCGCCACGGTCGCCGCACCGGAACGCACCAAGACGTCACCTCTGGACGACGGACGCGCCGGAGGGCAGTGCTGATGGCT
ACCCGAACACATGGTACGCGCACCGCAAACTCGGCGAGAAGAGCAAGCCCCCGAAGAACGCGACGACAAAGGGCGTCCAG
TTCGACGTCGGCAGCTTCGGAGCCACAGGCGACGGTCAGACCGACGACACCGGCGCGTTCCAGAATGCCTGGGCCCAGGC
CTGCTCCTCAGAACAACCCGCCGTCCTGCTCGTCCCCGCCGGAAAGAGCTACCTCGTCAAGGAGACCAGCCTGTCGGGGC
CGTGCAAGTCCAAGGTCACGTTCAAGCTCGAGGGAACCCTGGTGGCTCCGGAGGACAAGTCGGGCTGGAGCAAGCAAGGC
CACCCGCACTGGGTAAGCTTCAGCAACGTCGACAGCCTCACGGTGACCGGCAAGGGCGCCATGGACGGAAAGGGCAAGAC
GTCGTGGAAGAACTCGTGCCGCCGGAACCACAAGATGCCGTGCACCTTCGCGCCGGCGGCGCTCACCTTCTCGTCGTGCA
ACCACCTCAAGGTGGAAAACATAAAGCTGCTCAACGCCCCGCAGATCCACCTCTGGGTGGAGTTCTGCAGCGACGTGACG
CTGTCCCGCCTCACTATCGCGTCGCCCGGGGACAGTCCTGAGAACGATGGCATCCACGTGGCGCACAGCGACGGCGTCCG
CATCCTGGGCGCCAAGATCAAGGCCGGCGACGACTGCATCTCGATCGCCATGGGCACGACGAACCTGTACGCTACCAAGA
TCGAGTGCGGGCCGGGGCACGGGATCAGCGTCGGGAGCCTCGGGAAAGGGAGCACCAGGGCCGAGGTGTCCAACGTCACC
ATCGACGGCGCGCACGTGTCGGGCACGCTGTTCGGGGCCAGGATCAAGACGTGGCAGGGGGGCACGGGGTACGCCAGGGA
CATCAAGTTCCTCAACATGGTGATGGACAAGGTGAAGAACCCCATCGTCATCGACCAGAACTACTGCACGACGTCGGACC
CGTCCAAGCCAAAGGCGTGCAGCCAGAAGGAGTCCGCGGCGGTGGAGATCAGCAACGTGGAGTTCAGCAACATCAGGGGC
ACCAGCGTCAACAGGGATGCCATCAGGCTGCACTGCAGCGAGGCCTTCCCCTGCCGCGGCGTCGTGCTGCGGGACATCGA
ACTCAAGACGAGGGGAGGTGACGAGAAGAACGCCGCCACGAGCACCTGCGAGAACGCCGTGCTGGGCGAGACGAGCAACG
TTTCGCCGGCGCCGTGCTCGTCGGCGGCGACCAAAGAGGATTTG

ORF - retro_sita_1 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 52.89 %
Parental protein coverage: 89.21 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalFNVRRYGAHGDGRHDDTRSIAKTWAAACSSSQSAVVLIPRGKRHLINHVTLSGPCKSSIMLMIEGTLMAP
F.V...GA.GDG..DDT......WA.ACSS.Q.AV.L.P.GK..L.....LSGPCKS......EGTL.AP
RetrocopyFDVGSFGATGDGQTDDTGAFQNAWAQACSSEQPAVLLVPAGKSYLVKETSLSGPCKSKVTFKLEGTLVAP
ParentalPKGSHWSKKTNRHWIMFNDVDGLTIAGGGTIDGNGKIWWQNSCKTNSRPPCKQAPTALTFYSCKNLKLEN
...S.WSK....HW..F..VD.LT..G.G..DG.GK..W.NSC..N...PC..AP.ALTF.SC..LK.EN
RetrocopyEDKSGWSKQGHPHWVSFSNVDSLTVTGKGAMDGKGKTSWKNSCRRNHKMPCTFAPAALTFSSCNHLKVEN
ParentalLKLVNSQQIHMSVEDCSHVKIARLSITAPGTSPNTDGIHITRSKHVQVRDCTIKTGDDCMSIEDGTENLH
.KL.N..QIH..VE.CS.V...RL.I..PG.SP..DGIH...S..V......IK.GDDC.SI..GT.NL.
RetrocopyIKLLNAPQIHLWVEFCSDVTLSRLTIASPGDSPENDGIHVAHSDGVRILGAKIKAGDDCISIAMGTTNLY
ParentalASNIVCGPGHGISIGSLGDRGSRAHVVNVTVDTAWLYGTANGARIKTWQGGRGYAKNIVFENMVMGDVRN
A..I.CGPGHGIS.GSLG....RA.V.NVT.D.A...GT..GARIKTWQGG.GYA..I.F.NMVM..V.N
RetrocopyATKIECGPGHGISVGSLGKGSTRAEVSNVTIDGAHVSGTLFGARIKTWQGGTGYARDIKFLNMVMDKVKN
ParentalPIVIDQNYCDSATPCR----KQKSAVEV--SNVLFKNIRGTSASKEAIKLRCSTSVPCHGITLENVKLTL
PIVIDQNYC....P.......QK....V..SNV.F.NIRGTS....AI.L.CS...PC.G..L....L..
RetrocopyPIVIDQNYCTTSDPSKPKACSQKESAAVEISNVEFSNIRGTSVNRDAIRLHCSEAFPCRGVVLRDIELKT
ParentalKGGD--GVAKSTCENAKWRKSGTVTPQPCT
.GGD....A.STCENA.......V.P.PC.
RetrocopyRGGDEKNAATSTCENAVLGETSNVSPAPCS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Setaria italica was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Setaria italica was not studied using ChIP-Seq data.

EST - click to see more details

Setaria italica was not studied using EST data.

TSS - click to see more details

Setaria italica was not studied using FANTOM5 data.

Lab - click to see more details

retro_sita_1 was not experimentally validated.

Retrocopy orthology:
Setaria italica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Setaria italica Si032233m.g 1 retrocopy
retro_sita_1 ,


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