RetrogeneDB ID: | retro_rnor_711 | ||
Retrocopy location | Organism: | Rat (Rattus norvegicus) | |
| Coordinates: | 10:89307308..89307884(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSRNOG00000020749 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | Bax | ||
| Ensembl ID: | ENSRNOG00000020876 | ||
| Aliases: | None | ||
| Description: | apoptosis regulator BAX [Source:RefSeq peptide;Acc:NP_058755] |
Retrocopy-Parental alignment summary:
>retro_rnor_711
ATGGACGGGTCCGGGGATCAGCTCGGAGGCGGCGGGCCCACCAGCTCTGAACAGTTCATGAAGACAGGGGCCTTTTTGTT
ACAGGGTTTCATCCAGGATCGAGCAGAGAGGATGGCTGGGGAGACACCTGAGCTGACCTTGGAGCAGCCGCCCCAGGATG
CATCCACCAAGAAGCTGATCGAGTGTCTCAGGCGAATTAGAGATGAACTGGACAACAACATGGTGCTGCAGAGGATGGTT
GCTGATGTGGATACAGACTCCCCCCGAGAGGTCTTCTTCCGTGTGGCAGCTGACATGTTTGCAGACGGCAACTTCAACTG
GGGCCGGGTGGTCGCCCTTTTCTACTTCGCTAGCAAACTGGTGCACAAGGCCCTGTGCACTAAAGTGCCCGAGCTGATCA
GAACCATCATGGGCTGGACACTGGACTTCCTCCGGGAGCGGCTGCTTGTCTGGATCCAAAACCAGGGTGGCTGGGATGGC
CTCCTCTCCTACTTCGGGAACCCCACACGGCAGACAGTGACCATCTTTGTGGCTGGAGTCCTCACCGTCTCACTCACCAT
CTGGAAGAAGATGGGC
ORF - retro_rnor_711 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 94.27 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MDGSGDHLGGGGPTSSEQIMKTGAFLLQGFIQDRAERMAGETPELTLEQPPQDASTKKLSECLRRIGDEL |
| MDGSGD.LGGGGPTSSEQ.MKTGAFLLQGFIQDRAERMAGETPELTLEQPPQDASTKKL.ECLRRI.DEL | |
| Retrocopy | MDGSGDQLGGGGPTSSEQFMKTGAFLLQGFIQDRAERMAGETPELTLEQPPQDASTKKLIECLRRIRDEL |
| Parental | DNNMELQRMIADVDTDSPREVFFRVAADMFADGNFNWGRVVALFYFASKLVLKALCTKVPELIRTIMGWT |
| DNNM.LQRM.ADVDTDSPREVFFRVAADMFADGNFNWGRVVALFYFASKLV.KALCTKVPELIRTIMGWT | |
| Retrocopy | DNNMVLQRMVADVDTDSPREVFFRVAADMFADGNFNWGRVVALFYFASKLVHKALCTKVPELIRTIMGWT |
| Parental | LDFLRERLLVWIQDQGGWDGLLSYFGTPTWQTVTIFVAGVLTASLTIWKKMG |
| LDFLRERLLVWIQ.QGGWDGLLSYFG.PT.QTVTIFVAGVLT.SLTIWKKMG | |
| Retrocopy | LDFLRERLLVWIQNQGGWDGLLSYFGNPTRQTVTIFVAGVLTVSLTIWKKMG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 15 .67 RPM |
| SRP017611_kidney | 0 .00 RPM | 14 .31 RPM |
| SRP017611_liver | 0 .00 RPM | 7 .53 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_711 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_711 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_711 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Anolis carolinensis | ENSACAG00000017500 | 1 retrocopy | |
| Rattus norvegicus | ENSRNOG00000020876 | 2 retrocopies |
retro_rnor_2592, retro_rnor_711 ,
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