RetrogeneDB ID: | retro_acar_161 | ||
Retrocopy location | Organism: | Anole lizard (Anolis carolinensis) | |
| Coordinates: | GL343211.1:1034531..1034846(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | BAX | ||
| Ensembl ID: | ENSACAG00000017500 | ||
| Aliases: | None | ||
| Description: | BCL2-associated X protein [Source:HGNC Symbol;Acc:959] |
Retrocopy-Parental alignment summary:
>retro_acar_161
TATCTACCAAAGGAGGCTTTTTTCAACGTCACTGCCAGATGTTCTCTGATAGGACTTTCAACTAGGAATGAGTAGTAGTT
TTGTTCTACTTTGTGTGCAAGTTGGTCTTGAAGGCAATTTTTCACAAAAGTACCAGAGCTCATAAAGACCATCATTAGCC
ACACAATGGAGTATATCAAAAATCATATCCTGACCTAGATTCAAGCCCAGAGATGACGGGAAGGCCTCCTGTCCTACTTT
GGCACCCCAGCTTAGTAAACCATTGCTGTATTTGTGGCTGGCATCTTGACCACCTCACTGACCTTCTGGAAAATG
ORF - retro_acar_161 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 74.77 % |
| Parental protein coverage: | 50.72 % |
| Number of stop codons detected: | 6 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | YPPKEVFFRVAA-EMFSDGTFNWGRVVALFYFACKLVLKAIC-TKLPELIKTIISWTMEYIKNHVLTWIQ |
| Y.PKE.FF.V.A..MFSD.TFN...VV.LFYF.CKLVLKAI..TK.PELIKTIIS.TMEYIKNH.LT.IQ | |
| Retrocopy | YLPKEAFFNVTA<QMFSDRTFN*E*VVVLFYFVCKLVLKAIF>TKVPELIKTIISHTMEYIKNHILT*IQ |
| Parental | AQGGWEGLLSYFGTPTWQTIAVFAAGVLTASLTFWKM |
| AQ...EGLLSYFGTP...TIAVF.AG.LT.SLTFWKM | |
| Retrocopy | AQR*REGLLSYFGTPA**TIAVFVAGILTTSLTFWKM |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP009831_adrenal | 0 .00 RPM | 7 .52 RPM |
| SRP009831_brain | 0 .00 RPM | 2 .08 RPM |
| SRP009831_dewlap | 0 .00 RPM | 3 .29 RPM |
| SRP009831_embryo | 0 .00 RPM | 6 .49 RPM |
| SRP009831_heart | 0 .00 RPM | 5 .24 RPM |
| SRP009831_liver | 0 .00 RPM | 2 .58 RPM |
| SRP009831_lung | 0 .00 RPM | 7 .40 RPM |
| SRP009831_ovary | 0 .00 RPM | 2 .90 RPM |
| SRP009831_skeletal_muscle | 0 .00 RPM | 0 .73 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_161 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_161 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Anolis carolinensis | ENSACAG00000017500 | 1 retrocopy |
retro_acar_161 ,
|
| Rattus norvegicus | ENSRNOG00000020876 | 2 retrocopies |