RetrogeneDB ID: | retro_rnor_2366 | ||
Retrocopy location | Organism: | Rat (Rattus norvegicus) | |
| Coordinates: | 6:61868979..61869544(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | Metrnl | ||
| Ensembl ID: | ENSRNOG00000046202 | ||
| Aliases: | None | ||
| Description: | Meteorin-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q5RJL6] |
Retrocopy-Parental alignment summary:
>retro_rnor_2366
GGAGAACTGAGACTGTTGGTGTGGGACATCGGTGCTGAGGTTGGCCAGGTGCAGTAGTTAAGCCTAGAGCAGGGCTGGTC
CCGTTTGTGGGAGGCAATACCCCAACAGGGTATTCTGCAGGAGGACCACAGGCTTCAGTATGAGCTGATGAGTGAGCAGG
AAGGACTGGACATGCATGTGCTGTCTGCCCGATGTCAGCCGTGCAGTGACATTGAGGTTGTCCTTGCCATTTGCACCAGT
GGCTTCGTCATCCAAGGCTTCATCCAGGATGCCACTCATGTGCTAGAGCAACAAGCGTTGATCATCCACCCGACAGAGAG
TAGGCTCCATTGGAAGGAGAGCAGGGTCTTGAGACAGCTCCTGAGGGCAGTGGCCACGGGCTGCGTCACGGCACAGTACT
GCCGGAGTGGTGTATGTAGCCAGGGCACGGGGAATTGCTTTTCACAGGGCACGTGCACTTTGTGGGGGGCTCAGCTTGAC
TGTGCCACATGGTTTAGTGGCTTTCAAAGGATGTATAGAAGCACAAAGGAGAGGGGCACACAGCCTTGTCAAGATCAACA
TGGAG
ORF - retro_rnor_2366 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.73 % |
| Parental protein coverage: | 60.13 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 5 |
Retrocopy - Parental Gene Alignment:
| Parental | GELRLLVRDVRGEPGQVQCFSLEQG-GLFVEATPQQDI-SRRTTGF-QYELMSGQRGLDLHVLSAPCRPC |
| GELRLLV.D...E.GQVQ..SLEQG.....EA.PQQ.I..RRTTGF.QYELMS.Q.GLD.HVLSA.C.PC | |
| Retrocopy | GELRLLVWDIGAEVGQVQ*LSLEQGWSRLWEAIPQQGI>CRRTTGF<QYELMSEQEGLDMHVLSARCQPC |
| Parental | SDTEVLLAICTSDFVVRGFIEDVTHVPEQQVSVIHLRVSRLHRQKSRV-FQPAPEDSGHWLGHVTTLLQC |
| SD.EV.LAICTS.FV..GFI.D.THV.EQQ...IH...SRLH...SRV....APE.SGH.L.H.T.L... | |
| Retrocopy | SDIEVVLAICTSGFVIQGFIQDATHVLEQQALIIHPTESRLHWKESRV<LETAPEGSGHGLRHGTVLPEW |
| Parental | GVRPGHGEFLFTGHVHF-GEAQLGCAPRFSDFQKMYRKAEERGINPCE-INME |
| ...PGHGE.LFTGHVHF...AQL.CA..FS.FQ.MYR...ERG..PC..INME | |
| Retrocopy | CM*PGHGELLFTGHVHF>WGAQLDCATWFSGFQRMYRSTKERGTQPCQ>INME |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 1 .51 RPM |
| SRP017611_kidney | 0 .28 RPM | 6 .98 RPM |
| SRP017611_liver | 0 .00 RPM | 1 .14 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_2366 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_2366 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_2366 has 1 orthologous retrocopies within eutheria group .| Species | RetrogeneDB ID |
|---|---|
| Mus musculus | retro_mmus_927 |
Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Mus musculus | ENSMUSG00000039208 | 1 retrocopy | |
| Rattus norvegicus | ENSRNOG00000046202 | 1 retrocopy |
retro_rnor_2366 ,
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