RetrogeneDB ID: | retro_psin_6 | ||
Retrocopy location | Organism: | Chinese softshell turtle (Pelodiscus sinensis) | |
| Coordinates: | JH208549.1:398843..399830(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSPSIG00000001057 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSPSIG00000015261 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_psin_6
CTTTTTCTCTCTTTTCTTTTTTCCCTCATATTTCTTTTCTCTCTATTTTCCTCTTTCTTTTCTTTTTCTTTCTCTATTCT
CCTTTTCTTTTTTCGTTTCCCTCTCTCTTTTCTCTTTTTTATTTTTCTCTCTTTTTTCTCTCATTTTTCTTTTCTCTCTG
TTTTCTTTCTTTTCCCACTCTTTTCTCTTTCTTTCTCTCTTCTTTCTACTTCTTTTTTTCTTGTTTCCCTCTCTCTTTTC
TCTTTCTTTCTCTTCCATTTTTCTCTTTTTTCCTTTTTTTCTTGTTTCCCTCTCTTTTCTCTCTTTTTCTCTTCCCTTCT
CTCTCTCTCTCTCTCCTTTCTCCTGTTTTTTCTTGTTTCCCCCTCTTGTCTCTTTTTTTCTTTCTCTCTCTTTTTCTCTT
TCTTTCTCTCTTGTTTCTCTCATTTCCCTCTCTCTTTTCTCTTGTTTCTCTTTCTTTCTCTCTCTCTTCTCTTTCTTTCT
CTCGTTTCTCTCTTTTCTCCTCTTTTTTCTTATTTCCCTCTCTCTTTTCTCTCTCTTTTTCTCTTTCTCTCTAATTTCTC
TTTTTTCTTGTTTCCCTCTCTCTTTTCTCCCTTCCTTTCTCTCTCTTTTCTCCTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTTTTCTCCTCTTTT
CTCCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTTCTCCTCTCCTCTCCTCTCCTCTC
ORF - retro_psin_6 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 51.03 % |
| Parental protein coverage: | 60.59 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LTLFFPYSLPF-FSLFSFFLFPSFLSSLFLSLFPTFFFNFSHSFFLTFSPFFSLFS-FFFFSLISPPPPF |
| L.L.F..SL.F.FSLFS.F...SF...LF...FP..F..F....FL.F...FS..S.FF.F.L.S....F | |
| Retrocopy | LFLSFLFSLIFLFSLFSSFFSFSFSILLFFFRFPLSFLFF---IFLSFFSHFSFLSVFFLFPLFSLS--F |
| Parental | SLLSLSFLSLFLFPLFLFSLSFFFLSFSVF-FFSHFFLFLAYFSFSLTLFLFPHFFLFFLILFSSLLFLY |
| SLLS.SF...FL..L.LFS..FF...FS.F.FFS.F.LF...FS..L.L.L...F.LFFL...S.L.F.. | |
| Retrocopy | SLLSTSF---FLVSLSLFS--FFLFHFSLFSFFSCFPLFSLFFSSLLSLSL--SFLLFFLVSPSCLFFSF |
| Parental | SLLFLFSFSLF--FPPFFSLFSFFFLSFSLSLFFLSLFLFL-SFFYLFSLSLFLFFLFSFLSFFFLS-FS |
| SL.F.F..S.F..FP..F.LF.F..LS..L.L...SLF..L.S.F.L..LSLFLF.L..F..F.F.S.FS | |
| Retrocopy | SLFFSFFLSCFSHFPLSFLLFLFLSLSL-LFLSLVSLFSPLFSYFPLSFLSLFLF-LSNFSFFLFPSLFS |
| Parental | LFSLFSFLSLSFSFSLSFSLFSLFFSFLSLSFSLFSLFSFSLFFSFLSFY--FFLSLFFSF--SFSLFSL |
| .F...SFL.LSF..S...S.F..FF....LSF.L....SF.L.F.FLSF...FFLS.F.SF..SF.LFS. | |
| Retrocopy | PFLSLSFLLLSFFLSFFLSFFLSFFLSFFLSFFLSFFLSFFLSF-FLSFFLSFFLSFFLSFFLSFFLFSP |
| Parental | SFSLFSFFLSLFSLFF--SFLSFY--FFLSLFFSFSFSLFSLSFFPFFLFFFHSFLSLSLS |
| .FS..SFFLS.F..FF...FLSF...FFLS.F.SF..S.F...F..FFL.FF.SF.S..LS | |
| Retrocopy | LFSSLSFFLSFFLSFFLSFFLSFFLSFFLSFFLSFFLSFFLSFFLSFFLSFFLSFFSPLLS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Pelodiscus sinensis was not studied using RNA-Seq expression data.
Pelodiscus sinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_psin_6 retrocopy.
Pelodiscus sinensis was not studied using FANTOM5 data.
retro_psin_6 was not experimentally validated.
Retrocopy orthology:
Pelodiscus sinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Pelodiscus sinensis | ENSPSIG00000015261 | 1 retrocopy |
retro_psin_6 ,
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