RetrogeneDB ID: | retro_pper_58 | ||
Retrocopy location | Organism: | Peach (Prunus persica) | |
| Coordinates: | scaffold_2:2411909..2413250(+) | ||
| Located in intron of: | PRUPE_ppa000773mg | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | PRUPE_ppa002030mg | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_pper_58
GGAGGAGGGATGTTTGAGTATTTTGGGTGGGTGTATCATCTGGGTTTGAATAAGTTAGGGCATGAGTATTGTCACCTCCG
GTTTCTCTTCATCCGGGGCAAGTATGTGGAGATGTACAAGCGTGATCCTCACGAGAACCCCGGCATTAGACCCATCCGGC
GGGGTGCTGTTGGGCCTACACTGATGGTAGTGGAGCTCGGGCGCCGAAAGGTCCAGCATGGAGGCAAGGGTGGGGATATT
TATGTTCTTCGGTTTTACAATCGATTGGATGAAACAAAAAAGGGAGAAATTGCTTGTGCTACGGCTGGAGAAGCCCAAAA
ATGGATGGAGGCATTTGATCAGGCCAAGCAACAGGCTGAGTATGAGCTTGCAAGAGGAGCTAGTGCCAGAAACAAACTGA
ACATGGAAGAGGAGATTGATCTTGAAGGGCATCGACCTCGAGTTAGGCACTATGCACATGGATTGAAAAGGCTTATAAAA
ATTGGGCAAGGCCCGGAGACGCTCTTGCGCCAATCCTCAAGCTTGGGCCCAAATAGCTCAGAGGGGTACTTTCAAACGGA
CTTTGGAGATGCAGTTGAGGCGTATGAGTGGAAATGCGTGAGAACAGTTAATGGTGTTAGAATATTTCAAGATGTTGCTA
ACACTGAGAGTGGTAAAGGTGTTATCGTCAAGGCTGTTGGTGTTATTGAAGCAACTGCAGATACTGCTTTTGAAGTGATT
TTGAACACTGCTCGACATCAGAGATATGAGTGGGATACGCTGACAGGTGACTTAGAGCTGATAGATTCTTATGATGGATA
CTTTGATGTTGTCTATGGGACATTTGATCCTATGTATCTTTCTCGGTGGCATTCCAAGAAAGATTTTCTGTTTTCTAGGC
AATGGTTCCGAGGACAAGATGGAACGTATACAATCTTGCAATTCCCAGCAATTCATAAGAAGAAGCCTAAGAGGTCTGGA
TATCATCGTACAAAAATAAATCCATCTAGTTGGGAGATTAGAAATTTGAACGCATCCATGGGTTCAAATACTCCACGATG
TCTTGTCACACAAATGGTGGAGATACCTTCTAAGGGCTGGTGGAGATGGAAGAAAAATCACTTCTCAAACTTTGAAAAGA
GTGTACCTTATGCATTGTTGTGCCAAGTGGCAGGTCTGAAGGATTATATTGGAGCAAATCCTGCACTCAAATTCAAATCT
GCTGCTTCTGTTATCAAATCAAAAGTACCTGATGGTCCCGTTTCCAATGCTGAATATGAGGCTGAGGCAGTGCAGGATGA
GTTTTATGATGCAATTTCAGCGGGCTCTTCATCTTCTGATGAAGAAAGTGAGAGTGATGAG
ORF - retro_pper_58 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 77.68 % |
| Parental protein coverage: | 60.61 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | GSSTFEYFGWVYHLGVNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVVGPTLMLEEVGRRK |
| G...FEYFGWVYHLG.N..GHEYCHLRFLFIRGKYVEMYKRDPHENPGI.PIRRG.VGPTLM..E.GRRK | |
| Retrocopy | GGGMFEYFGWVYHLGLNKLGHEYCHLRFLFIRGKYVEMYKRDPHENPGIRPIRRGAVGPTLMVVELGRRK |
| Parental | VYY----GDVYVLRFFNRLDESKKGEIACVTAGEAQKWLEAFDQAKQQAEFELTRGGSARNKLNMETELN |
| V......GD.YVLRF.NRLDE.KKGEIAC.TAGEAQKW.EAFDQAKQQAE.EL.RG.SARNKLNME.E.. | |
| Retrocopy | VQHGGKGGDIYVLRFYNRLDETKKGEIACATAGEAQKWMEAFDQAKQQAEYELARGASARNKLNMEEEID |
| Parental | LDVHRPRVRRYASGLKKLIRIGQGPETLLCQSSSLGANGSTDGYFERDINDAIEAYEWKCVRTINGVRIF |
| L..HRPRVR.YA.GLK.LI.IGQGPETLL.QSSSLG.N.S..GYF..D..DA.EAYEWKCVRT.NGVRIF | |
| Retrocopy | LEGHRPRVRHYAHGLKRLIKIGQGPETLLRQSSSLGPN-SSEGYFQTDFGDAVEAYEWKCVRTVNGVRIF |
| Parental | EDVANSESGKGVIVKAVAVIDASADTAFEVLLNLGRHQRYEWDMLTGDLELLDSYDGHLDVVYGTFDP-- |
| .DVAN.ESGKGVIVKAV.VI.A.ADTAFEV.LN..RHQRYEWD.LTGDLEL.DSYDG..DVVYGTFDP.. | |
| Retrocopy | QDVANTESGKGVIVKAVGVIEATADTAFEVILNTARHQRYEWDTLTGDLELIDSYDGYFDVVYGTFDPMY |
| Parental | --RWHSKRDFIFSRQWFCGQDGTYTILHFPAVHKKKPPRSGYRRTKINPSTWEIRNLNTSMGSNTPRCLV |
| ..RWHSK.DF.FSRQWF.GQDGTYTIL.FPA.HKKKP.RSGY.RTKINPS.WEIRNLN.SMGSNTPRCLV | |
| Retrocopy | LSRWHSKKDFLFSRQWFRGQDGTYTILQFPAIHKKKPKRSGYHRTKINPSSWEIRNLNASMGSNTPRCLV |
| Parental | TQMLEINSAGWCRWKKNHCSKFEKSVPYALLCQVGGLKEYIGANPALKFESSTTVIQSKLSEVSVSNAEF |
| TQM.EI.S.GW.RWKKNH.S.FEKSVPYALLCQV.GLK.YIGANPALKF.S...VI.SK.....VSNAE. | |
| Retrocopy | TQMVEIPSKGWWRWKKNHFSNFEKSVPYALLCQVAGLKDYIGANPALKFKSAASVIKSKVPDGPVSNAEY |
| Parental | EESEVKDEFYDAMSADSSSSDEELDNKD |
| E...V.DEFYDA.SA.SSSSDEE..... | |
| Retrocopy | EAEAVQDEFYDAISAGSSSSDEESESDE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Prunus persica was not studied using RNA-Seq expression data.
Prunus persica was not studied using ChIP-Seq data.
Prunus persica was not studied using EST data.
Prunus persica was not studied using FANTOM5 data.
retro_pper_58 was not experimentally validated.
Retrocopy orthology:
Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Prunus persica | PRUPE_ppa002030mg | 1 retrocopy |
retro_pper_58 ,
|