RetrogeneDB ID: retro_pper_31

Retrocopy location

• Organism: Peach (Prunus persica)
• Coordinates: scaffold_1:30298029..30298536(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: PRUPE_ppa012480mg
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: PRUPE_ppa012140mg
• Aliases: None
• Description: None

Sequence

>retro_pper_31
ATGAACAATATCCTGGGACTTCTGAGGCTTCGGATCAAGCGAGGTATCAACCTTGCTGTTCGTGATACCAAGACCAGTGA
TCCTTACGTGGTGGTCACCATGGGTTCCCAGAAACTGAAAACAAAAGTGATAAAAAAGAATTGCAACCCTCAGTGGAACG
AGGAGCTGACGCTTTCCATTACAAATTTGGAAGAAAACATCCATCTAGAAGTGTACGACAAGGACACGTTAACTGTGGAC
GACAAGATGGGAGATGCAGACATAGACATCAAACCCTACGTTGAGTGCCTCAAGATGGGATTGGACGTCCTCCCGAAGGG
CTGCGCCGTCAAGAAAGTTCAGCCCAACAGGACCAACTGCCTGTCCTCTGAGAGCTGCTGCGTTTGGGAAAATGGCAAAA
TTGTTCAGGACATGATTCTCAAACTGAACAACGTCGAGTGCGGCGAAATTGTGCTTCAAATTGAGTGGATCCACCTTCCT
GGTTCTAAAGGTTTAGCAGGTGTCTAG

Alignment

ORF - retro_pper_31 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.84 %
• Parental protein coverage: 91.21 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MENLLGLLRIRVKRGVNLAVRDVRSSDPYVVIKMGKQKLKTRVIKKDVNPEWNEDLTLSVTDPSIPIKLT
          M.N.LGLLR.R.KRG.NLAVRD...SDPYVV..MG.QKLKT.VIKK..NP.WNE.LTLS.T.....I.L.
Retrocopy MNNILGLLRLRIKRGINLAVRDTKTSDPYVVVTMGSQKLKTKVIKKNCNPQWNEELTLSITNLEENIHLE

Parental  VYDHDTFSKDDKMGDGEFGIVPYIEALKMNLEGVASGTTVMRIQPSRANCLAEESCILWKDGKVVQDMCL
          VYD.DT...DDKMGD....I.PY.E.LKM.L.....G..V...QP.R.NCL..ESC..W..GK.VQDM.L
Retrocopy VYDKDTLTVDDKMGDADIDIKPYVECLKMGLDVLPKGCAVKKVQPNRTNCLSSESCCVWENGKIVQDMIL

Parental  RLRNVECGEVEIQLQWIDLPGSKGLS
          .L.NVECGE...Q..WI.LPGSKGL.
Retrocopy KLNNVECGEIVLQIEWIHLPGSKGLA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Prunus persica was not studied using RNA-Seq expression data.

ChIP-Seq

Prunus persica was not studied using ChIP-Seq data.

EST

Prunus persica was not studied using EST data.

TSS

Prunus persica was not studied using FANTOM5 data.

Lab

retro_pper_31 was not experimentally validated.

Homology

Retrocopy orthology:

Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Prunus persica	PRUPE_ppa012140mg	1 retrocopy	retro_pper_31 ,