RetrogeneDB ID: retro_pper_29

Retrocopy location

• Organism: Peach (Prunus persica)
• Coordinates: scaffold_2:16627379..16628006(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: PRUPE_ppa026854mg
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: PRUPE_ppa010984mg
• Aliases: None
• Description: None

Sequence

>retro_pper_29
ATGGCAAACCCTAGCCCTTCAAACATCGACATTAGCGAAAACGAGGAACTTCAACAGGACCAACAAGATTGGGATTTTGC
TAAGTACCTTGCACAACTGTTAGCCTCGAGTTCTAATCACAACGCTGCCGGAACTGCTACTCAAACAGAATCGAGAGGTG
TGGCAGAGGAAGGTGGAGAAAAGCGGAGAAGAATTGGAGGACCCAAAACGTCGTCGTGGGTTGGAACTGGCAGCCCAGAA
GGCTCTCAAGGCAGTGAATGGAATCGGAGTGAAATCGATGGCCTATTTTGCTCTATCTGCTTGGACGCTTGGACCAATGA
CGGCGATCATCACATCAGTTGCCTTCCCTGTGGACATGTATACGGCATGTCTTGCATAACAAAATGGCTACAGCATAGAA
GTTCCGGGAAGTGTCCTCAATGCAAAAAGAAATGCAAGTTGGGGGATATTAGGAAGCTTTTCGTATCACGGGTTGTTTCT
GTTGATGAAGAAGCACGAGATAGGATTCGGGTACTTGAGGATAAATGTACTTCTCTTGAGGAGAAGGTTGCTGAATATGC
TAAGAAAGAAGCTGAACGGCTACAGAAAGACACTGAGTTTGGAGCCTGTTTGGGAGTGTTTCTCGAA

Alignment

ORF - retro_pper_29 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.98 %
• Parental protein coverage: 82.02 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EEEDEEEDFIDADYAAYLSELLPSSFGHHAGGISGGTESRDGAEKGGEKRRRIRGPGTLSLGGIGSAEGS
          E.E....D..D.D.A.YL..LL.SS..H.A.G....TESR..AE.GGEKRRRI.GP.T.S..G.GS.EGS
Retrocopy ENEELQQDQQDWDFAKYLAQLLASSSNHNAAGTATQTESRGVAEEGGEKRRRIGGPKTSSWVGTGSPEGS

Parental  QGNEWNRSGIDGLFCPICLDAWTNDGDHRICCLPCGHIYGMSCITKWLQRRNSRKCPQCNQKCKLKDVRK
          QG.EWNRS.IDGLFC.ICLDAWTNDGDH.I.CLPCGH.YGMSCITKWLQ.R.S.KCPQC..KCKL.D.RK
Retrocopy QGSEWNRSEIDGLFCSICLDAWTNDGDHHISCLPCGHVYGMSCITKWLQHRSSGKCPQCKKKCKLGDIRK

Parental  LFVSQVLSVDEESQKRIRVLEDKCASLEEKVADLSKKEAEWLKREGE
          LFVS.V.SVDEE...RIRVLEDKC.SLEEKVA...KKEAE.L....E
Retrocopy LFVSRVVSVDEEARDRIRVLEDKCTSLEEKVAEYAKKEAERLQKDTE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Prunus persica was not studied using RNA-Seq expression data.

ChIP-Seq

Prunus persica was not studied using ChIP-Seq data.

EST

Prunus persica was not studied using EST data.

TSS

Prunus persica was not studied using FANTOM5 data.

Lab

retro_pper_29 was not experimentally validated.

Homology

Retrocopy orthology:

Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Prunus persica	PRUPE_ppa010984mg	1 retrocopy	retro_pper_29 ,