RetrogeneDB ID: | retro_pper_28 | ||
Retrocopy location | Organism: | Peach (Prunus persica) | |
| Coordinates: | scaffold_4:13348300..13348639(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | PRUPE_ppa013625mg | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | PRUPE_ppa013607mg | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_pper_28
ATGGTTGAACTAGACGTCCAGATCCCAACTGCTTTTGACCCGTTCGCCGAAGCCAAAGACGCGGATGCCCCCGGAGCCAA
GGAGTATGTGCATATCCGGGTGCAGCAGAGAAATGGAAAGAAGTGCCTGACAACAGTTCAAGGGCTGAAGAAAGACTTCA
GCTACGAGAAGATCCTTAAGGATCTGAAAAAAGAGTTCTGCTGCAACGGCAATGTTGTCCAGGACAAAGAGCTTGGCAAG
ATAATTCAGCTCCAAGGTGATCAACGCAAGAACGTGCTTCAGTTTCTTGTTCAGGCCAAGATTGTGAAGAAGGAGCAGAT
AAAGATGCATGGTTTTTGA
ORF - retro_pper_28 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 79.65 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MSELDVQIPTAFDPFAEANAEDSGAGTKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN |
| M.ELDVQIPTAFDPFAEA...D...G.KEYVHIR.QQRNG.K.LTTVQGLKK.FSY.KILKDLKKEFCCN | |
| Retrocopy | MVELDVQIPTAFDPFAEAKDADA-PGAKEYVHIRVQQRNGKKCLTTVQGLKKDFSYEKILKDLKKEFCCN |
| Parental | GTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKDNIKIHGF |
| G.VVQD.ELG..IQLQGDQRKNV..FLVQA.IVKK..IK.HGF | |
| Retrocopy | GNVVQDKELGKIIQLQGDQRKNVLQFLVQAKIVKKEQIKMHGF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Prunus persica was not studied using RNA-Seq expression data.
Prunus persica was not studied using ChIP-Seq data.
Prunus persica was not studied using EST data.
Prunus persica was not studied using FANTOM5 data.
retro_pper_28 was not experimentally validated.
Retrocopy orthology:
Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Prunus persica | PRUPE_ppa013607mg | 1 retrocopy |
retro_pper_28 ,
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