RetrogeneDB ID: retro_pper_27

Retrocopy location

• Organism: Peach (Prunus persica)
• Coordinates: scaffold_2:16199032..16199299(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: PRUPE_ppa023195mg
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: PRUPE_ppa014081mg
• Aliases: None
• Description: None

Sequence

>retro_pper_27
ATGGGGAAGAAAAAGTCGAGGGCCAAGCCTGTTGCTAAGCAGCGAATGGACAAGCTTGACACTGCATTCTGTTGCCCCTT
CTGCAACCACGGGAGCAGCGTCGAATGCGACATTGACATGAAGAACATGATTGGGGAGGCTCTCTGCAGCGTTTGCCAAG
AGAGTTATAGCACAACCATCACAGCTTTGACTGAACCCATAGACGTCTACAGTGAATGGATAGACGAATGTGAGCGGGTC
AACACCATTATTGCTGATGATCAATGA

Alignment

ORF - retro_pper_27 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.72 %
• Parental protein coverage: 97.73 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGKRKSKAKPAAKKRMDKLDTVFCCPFCNHGSSVECRIDMKNLIGEAICSICQENFSTTITALTEPIDVY
          MGK.KS.AKP.AK.RMDKLDT.FCCPFCNHGSSVEC.IDMKN.IGEA.CS.CQE..STTITALTEPIDVY
Retrocopy MGKKKSRAKPVAKQRMDKLDTAFCCPFCNHGSSVECDIDMKNMIGEALCSVCQESYSTTITALTEPIDVY

Parental  SEWIDECERVNTVDDD
          SEWIDECERVNT...D
Retrocopy SEWIDECERVNTIIAD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Prunus persica was not studied using RNA-Seq expression data.

ChIP-Seq

Prunus persica was not studied using ChIP-Seq data.

EST

Prunus persica was not studied using EST data.

TSS

Prunus persica was not studied using FANTOM5 data.

Lab

retro_pper_27 was not experimentally validated.

Homology

Retrocopy orthology:

Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Musa acuminata	GSMUA_Achr4G31010_001	1 retrocopy	retro_macu_1,
Oryza punctata	OPUNC02G02130	1 retrocopy	retro_opun_14,
Oryza rufipogon	ORUFI02G02720	1 retrocopy	retro_oruf_23,
Solanum tuberosum	PGSC0003DMG400031773	2 retrocopies	retro_stub_147, retro_stub_148,
Prunus persica	PRUPE_ppa014081mg	1 retrocopy	retro_pper_27 ,