RetrogeneDB ID: retro_ogar_97

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873646.1:4384721..4385273(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000028908
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000026982
• Aliases: None
• Description: None

Sequence

>retro_ogar_97
ATGGAGAACGGAGCGGTGTACAGCCCCACCACGGAGGAGGACCCGGGCCCCGTCAGAGGCCCCCGGAGCGGCCTCGCTGC
CTGCTTCTTCCCGGGGCGGCTCGTTTGGTACCGGCATGTTCTCAAAGGCTTGCAGCTGGTGCTGTCTCTCTTGGCCTTTG
TCTGTGAAGAAGTTGTATCACAGTGTACTTTGTGTGGAGGACTTTACTTTTTCGAATTTGTAAGCTGCAGTGCCTTTCTT
TTGAGTCTCCTCATGTTGATTGTGTATTTCACTCCACTTTATGAGAAAATCGATGCCACCAAAATAAAATCATCGGATTT
TTATATTACTCCGGGAATAGGATGTGTATTTTTGCTGGCATCCATCATCTTTGTGTCCACGCATGACAAGACTGCAGCTG
AATTTGCTGCAATCGTGTTTGGGTTTATAGCAAGTTTTATGTTCTTGATTGACTTTCTTGTTATGCTCCGTGAAAAACGA
CAGGAGTCCTCGCTGAGAAAACCTGAAAATACCACTGCGCCATCAGCCCTCACTGAACCACTTAATGCTTAA

Alignment

ORF - retro_ogar_97 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.45 %
• Parental protein coverage: 99.46 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MENGAVYSPTTEEDPGPVRGPRSGLAACFFPGRLVWYRHVLKGLQLVLSLLAFVCEEVVSQCTLCGGLYF
          MENGAVYSPTTEEDPGPVRGPRSGLAACFFPGRLVWYRHVLKGLQLVLSLLAFVCEEVVSQCTLCGGLYF
Retrocopy MENGAVYSPTTEEDPGPVRGPRSGLAACFFPGRLVWYRHVLKGLQLVLSLLAFVCEEVVSQCTLCGGLYF

Parental  FEFVSCSAFLLSLLMLIVYFTPLYEKIDATKIKSSDFYITPGIGCVFLLASIIFVSTHDKTAAEFAAIVF
          FEFVSCSAFLLSLLMLIVYFTPLYEKIDATKIKSSDFYITPGIGCVFLLASIIFVSTHDKTAAEFAAIVF
Retrocopy FEFVSCSAFLLSLLMLIVYFTPLYEKIDATKIKSSDFYITPGIGCVFLLASIIFVSTHDKTAAEFAAIVF

Parental  GFIASFMFLIDFHVMLREKRQESSLRKPENTTAPSALTEPLNA
          GFIASFMFLIDF.VMLREKRQESSLRKPENTTAPSALTEPLNA
Retrocopy GFIASFMFLIDFLVMLREKRQESSLRKPENTTAPSALTEPLNA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_97 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000015014	1 retrocopy	retro_dnov_1,
Otolemur garnettii	ENSOGAG00000026982	1 retrocopy	retro_ogar_97 ,
Pan troglodytes	ENSPTRG00000014720	1 retrocopy	retro_ptro_3147,
Tursiops truncatus	ENSTTRG00000003526	1 retrocopy	retro_ttru_1857,
Vicugna pacos	ENSVPAG00000003039	1 retrocopy	retro_vpac_376,