RetrogeneDB ID: retro_ogar_940

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873531.1:2814991..2815560(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: INSIG2
• Ensembl ID: ENSOGAG00000007739
• Aliases: None
• Description: insulin induced gene 2 [Source:HGNC Symbol;Acc:20452]

Sequence

>retro_ogar_940
TTTTTTATTGGAGTATTTCTTGCACCAGTATTAAATTTACTTCAGATTCAAAGAAACGTGACACTCTTTCCACCTGATGT
GATTGCAAGCATCTTTTCTTCTGCATGGTGGGTACCACCATGTTGTGGCACAGCTTCAGCTGTGATTGGGTTATTATACC
CCTGCATTGACAGGCATTTAGGAGAACCACATAAATTTAAAAGAGAGTGGTCCAGCGTAATGCGGTGTGGAGCGTCTTTG
TTGGTATAAATCATGCCAGTGCTAAAGTGGATTTTGATAACAACATACAGTTATCTCTTACCCTGGCTGCACTCTCCACT
GGACTATGGTGGACCTTTGATAGATCTAGAAGTGGTTTTGGCCTTGGAGTAGGAATTGCTTTCTTGGCGACTGTGGTCAC
TCACCTGCTAGTCTATGATAGTGTTTATCAATATACATCTCCAGCTTTTCCCTATGTTCATTCTTGGCTACCAGGTATAT
TTTTTGGTGGCAGCATAACAATAGGAAACACTGATCGACAACTGGTAATGTAAGAATATAAAGTTATTGCAGAAAAATAT
CATCAGGAA

Alignment

ORF - retro_ogar_940 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.53 %
• Parental protein coverage: 84.44 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FFIGVFLALVLNLLQIQRNVTLFPPDVIASIFSSAWWVPPCCGTASAVIGLLYPCIDRHLGEPHKFKREW
          FFIGVFLA.VLNLLQIQRNVTLFPPDVIASIFSSAWWVPPCCGTASAVIGLLYPCIDRHLGEPHKFKREW
Retrocopy FFIGVFLAPVLNLLQIQRNVTLFPPDVIASIFSSAWWVPPCCGTASAVIGLLYPCIDRHLGEPHKFKREW

Parental  SSVMRCVA-VFVGINHASAKVDFDNNIQLSLTLAALSIGLWWTFDRSRSGFGLGVGIAFLATVVTQLLVY
          SSVMRC.A.VFVGINHASAKVDFDNNIQLSLTLAALS.GLWWTFDRSRSGFGLGVGIAFLATVVT.LLVY
Retrocopy SSVMRCGA<VFVGINHASAKVDFDNNIQLSLTLAALSTGLWWTFDRSRSGFGLGVGIAFLATVVTHLLVY

Parental  NGVYQYTSPDFLYVRSWLPCIFFAGGITMGNIGRQLAMYECKVIAEKSHQE
          ..VYQYTSP.F.YV.SWLP.IFF.G.IT.GN..RQL.M.E.KVIAEK.HQE
Retrocopy DSVYQYTSPAFPYVHSWLPGIFFGGSITIGNTDRQLVM*EYKVIAEKYHQE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_940 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000008765	1 retrocopy	retro_eeur_508,
Myotis lucifugus	ENSMLUG00000028113	1 retrocopy	retro_mluc_2270,
Macaca mulatta	ENSMMUG00000006354	1 retrocopy	retro_mmul_703,
Monodelphis domestica	ENSMODG00000000458	2 retrocopies	retro_mdom_1872, retro_mdom_542,
Otolemur garnettii	ENSOGAG00000007739	1 retrocopy	retro_ogar_940 ,