RetrogeneDB ID: retro_ogar_931

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873530.1:26106792..26107824(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ASNA1
• Ensembl ID: ENSOGAG00000012205
• Aliases: None
• Description: arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) [Source:HGNC Symbol;Acc:752]

Sequence

>retro_ogar_931
ATGGCAGCAGGGGTGGCCAGGTGGGGGGCTGTGGTGGAGGAGTTCGAGGATGTGCCTGATGTGGAGCTGCTGGAACCTAC
GCTTAGCAACATCATCCAACAGTGCAGCCTAAAATGGATCTTCATTGGGGGCAAGGGTGGCGTGGGGAAGACCGCCTGCA
GCTGCAGCCTGGCAGTACAGCTCTCCGAGGGGCGAGAGAGTGTTCTGATAATCTCCACGGACCCAGCCCACAACATCTCA
GATGCTTTTGACCAGAAGTTCTCAAAGCTACCTACAAAGGTCAAAGGCTATGACAACCTCTTTGCTATGGAGATTGACCC
TAGCCTGGGCGTGGCAGAGCTGGTCGAGGAGGACAACATGTGAAGCATGGACAAGAAGATGATGCAGGAGGCCAGGAGCG
CCTTTCCTGACATCCACGAGGCCCTGAGCTATGCTGAGGTCGTGAGGCTGGTGAAGGGCGTGAACGTCTCTGTGCTGGTG
TTTGACACAGCGCCCATGGGACACACACTGAGGCTTCTCAACTTCCCCACCATCGTGGAGTGGGGTCTGGGCCGTCTCAT
GCAGATCAAGAACCAAATCAGCCCCTTCATCTCACAGATGTGCAATATGCTGGGCCTGGGGGACATGAATATAGATTAGT
TGGCCTCCAAGCTGGAGGAGACACTGCCTGTCATCTGCTCTGTCAGTGAACAGTTCAAGGACCTTGAGCAGACAACCTTC
ATCCGTGTATGCATTGCTGAGTTTCTGTCCCTATATAAAACAGAACGGTTGATCCAGGAGCTACCCAAGTGCAAGATTGA
CACCCACATCATCATCATCAACCAGCTTGTCTTCCCTGACCCTGAGAAACCCTGCAAAATGTGTGAAGCCTGCCACAAGA
TCCAAGCCAAGTACTTGGACCAGATGGAGGACCTGTATGAAGACTTCCACATCATGAAGCTGCCACTGTTACCCCATGAG
GTGTGGGGGGCAGACAAGGTCAACACCTTCTCAGCCCTCCTCCTGGAGCCCTACAAGCCCCCCAGTACCCAG

Alignment

ORF - retro_ogar_931 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.51 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAAGVAGWGAEAEEFEDAPDVEPLEPTLSNIIEQRSLKWIFVGGKGGVGKTTCSCSLAVQLSKGRESVLI
          MAAGVA.WGA..EEFED.PDVE.LEPTLSNII.Q.SLKWIF.GGKGGVGKT.CSCSLAVQLS.GRESVLI
Retrocopy MAAGVARWGAVVEEFEDVPDVELLEPTLSNIIQQCSLKWIFIGGKGGVGKTACSCSLAVQLSEGRESVLI

Parental  ISTDPAHNISDAFDQKFSKVPTKVKGYDNLFAMEIDPSLGVAELPDEFFEEDNMLSMGKKMMQEAMSAFP
          ISTDPAHNISDAFDQKFSK.PTKVKGYDNLFAMEIDPSLGVAEL.....EEDNM.SM.KKMMQEA.SAFP
Retrocopy ISTDPAHNISDAFDQKFSKLPTKVKGYDNLFAMEIDPSLGVAEL----VEEDNM*SMDKKMMQEARSAFP

Parental  GIDEAMSYAEVMRLVKGMNFSVVVFDTAPTGHTLRLLNFPTIVERGLGRLMQIKNQISPFISQMCNMLGL
          .I.EA.SYAEV.RLVKG.N.SV.VFDTAP.GHTLRLLNFPTIVE.GLGRLMQIKNQISPFISQMCNMLGL
Retrocopy DIHEALSYAEVVRLVKGVNVSVLVFDTAPMGHTLRLLNFPTIVEWGLGRLMQIKNQISPFISQMCNMLGL

Parental  GDMNADQLASKLEETLPVIRSVSEQFKDPEQTTFICVCIAEFLSLYETERLIQELAKCKIDTHNIIVNQL
          GDMN.D.LASKLEETLPVI.SVSEQFKD.EQTTFI.VCIAEFLSLY.TERLIQEL.KCKIDTH.II.NQL
Retrocopy GDMNID*LASKLEETLPVICSVSEQFKDLEQTTFIRVCIAEFLSLYKTERLIQELPKCKIDTHIIIINQL

Parental  VFPDPEKPCKMCEARHKIQAKYLDQMEDLYEDFHIVKLPLLPHEVRGADKVNTFSALLLEPYKPPSTQ
          VFPDPEKPCKMCEA.HKIQAKYLDQMEDLYEDFHI.KLPLLPHEV.GADKVNTFSALLLEPYKPPSTQ
Retrocopy VFPDPEKPCKMCEACHKIQAKYLDQMEDLYEDFHIMKLPLLPHEVWGADKVNTFSALLLEPYKPPSTQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_931 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000005010	1 retrocopy	retro_etel_656,
Nomascus leucogenys	ENSNLEG00000010460	1 retrocopy	retro_nleu_2842,
Otolemur garnettii	ENSOGAG00000012205	1 retrocopy	retro_ogar_931 ,
Pan troglodytes	ENSPTRG00000010537	1 retrocopy	retro_ptro_604,