RetrogeneDB ID: retro_ogar_810

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873528.1:25656036..25657194(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: G3BP2
• Ensembl ID: ENSOGAG00000000157
• Aliases: None
• Description: GTPase activating protein (SH3 domain) binding protein 2 [Source:HGNC Symbol;Acc:30291]

Sequence

>retro_ogar_810
ATGAAGCAACATTACACTTTGGTGATTAAAGCTCCAGAATATTTACACAGGCTTCATGGTGGGAATTCTTCCTGTGTTCA
CGGTGGAGCAGATGCTAGTGGAAAGCCTAGGAAGCTCTTTGTAAATAAAACACTATGCATCACAAAGTATTATCTCTGCA
CTTCAGTGGATTTCATGCTAAAATTTATCAGATGCATGCCCATGCAACCTGAGTGATAGAATAGTTATCCAGGTCACAGG
TTTGCTGTCTAACAGAGGACAACCAGAGAGGAAGTTCATGCAAACCTTTGTTCTGGTTTCTGAACAATCTATTCTAAATA
CCTTTTACATTCACAATGATATGTTTCATTATGAAGATGAAGTATTTGGTGATTCTGAACCTCACTCTATGAAGGATCAG
AAGATGAAGTAGAAGAGGAGCAAGAAGAAAGGTAACTGTCTTCTGAACCCAGGCAAGAAAATGCTAACGATGGCCACTGT
GGAGCTCGCCTGTGACCAACGGCAAAGAGCAACGCTTGAAAGAACCCCCTCATGAACCTGAACCTAAACCAGAATCTGAA
ATAAAACTAAAGAGCTGAAACCACAAGTTATGGAGATGAACTTAAAAGAAGTAGGGCAGGCACCTCCTCCTCTGCCTCCT
CCTGCAAAACCTGTTTCTCTGCCACAAGAACCACCAAAGCCAAGAGTTGAAGCTAAAACAGAAGTTCAGTCTCAGCCACC
CAGAGGGCATAAACAATGGCTAGAGAATGACCTGATTTCCCTCCCAAAGGACCAAGACCAGGCAGAGAAGATATGAAACA
GAGTGACTCTGACAACTATAGAATAGTTCATTATCTAGAGTCATCAATTTTTTGTTGATAACTTGTCATTTGACATTTAT
GAAAATGAACCGAAAGAATTCCTCATGAGTTTTGGAAATGTTGTGGAATTTCACATCAATATCAAGGGTCTTGGAGAAAA
GCTTCCAAATTTAAGGTTTGTGGGTTTTGATGGCTATGAACCAGTTCAGTGAATCTTCAAAACAATTATGTTTCCAGAAG
TTTGTTCAAACATGGAAGAGAAAAAACTAAGAGCTTCAAGACAGTGAGAGAATAAAGGTAGTGGTGATGATTGCAGGGAT
ATTAGCCTCAGTGATCAAGGTCTGGTGGTCCATGTGGA

Alignment

ORF - retro_ogar_810 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.0 %
• Parental protein coverage: 87.08 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 8

Retrocopy - Parental Gene Alignment:

Parental  VRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQ-EAVYGQNDIHHKVLSLNFSECHTKIRHVDAHA
          ..Q.YTL..KAPEYLHR..G.NSS.VHGG.DASGKP..EA....N..HHKVLSL.FS..H.KI....AHA
Retrocopy MKQHYTLVIKAPEYLHRLHGGNSSCVHGGADASGKPR<EALCK*NTMHHKVLSLHFSGFHAKIYQMHAHA

Parental  T-LSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYVHNDMFRYEDEVFGDSEP-ELDEESEDE
          T.LSD..V.QV.GLLSN.GQPERKFMQTFVL..E.S..N.FY.HNDMF.YEDEVFGDSEP..L.E.SEDE
Retrocopy T<LSDRIVIQVTGLLSNRGQPERKFMQTFVLVSEQSILNTFYIHNDMFHYEDEVFGDSEP<SLYEGSEDE

Parental  VEEEQEERQPSPEPVQENANSGYYEAH-PVTNGIEEPLDESSHEPEPEPESE-TKTEELKPQVEEKNLEE
          VEEEQEER..S.EP.QENAN.G...A..PVTNG.E..L.E..HEPEP.PESE..KT.ELKPQV.E.NL.E
Retrocopy VEEEQEER*LSSEPRQENANDGHCGAR<PVTNGKEQRLKEPPHEPEPKPESE<NKTKELKPQVMEMNLKE

Parental  L-EEKSATPPPTEPVSLPQEPPKPRVEAKPEVQSQPPRVREQ-RPRERPGFPPRGPRPGRGDMEQNDSDN
          ........PPP..PVSLPQEPPKPRVEAK.EVQSQPPR...Q...RE.P.FPP.GPRPGR.DM.Q.DSDN
Retrocopy VGQAPPPLPPPAKPVSLPQEPPKPRVEAKTEVQSQPPRGHKQ<MARE*PDFPPKGPRPGREDMKQSDSDN

Parental  RRIIRYPDSHQLF-VGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILI
          .RI..Y..S...F.V.NL..DI.ENE.KEF.MSFGNVVE..IN.KG.G.KLPN..FV.FD..EPVQ.I..
Retrocopy YRIVHYLES-SIF>VDNLSFDIYENEPKEFLMSFGNVVEFHINIKGLGEKLPNLRFVGFDGYEPVQ*IF-

Parental  AKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRG-PGGPRG
          .K.IMF..EV..N.EEKK.RA.R..E..G.GDD.RDI...D.G..GGP.G
Retrocopy -KTIMF-PEVCSNMEEKKLRASRQ*ENKGSGDDCRDISLSDQG<SGGPCG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_810 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000019897	1 retrocopy	retro_cjac_4164,
Echinops telfairi	ENSETEG00000016219	1 retrocopy	retro_etel_86,
Gorilla gorilla	ENSGGOG00000014947	1 retrocopy	retro_ggor_1763,
Otolemur garnettii	ENSOGAG00000000157	1 retrocopy	retro_ogar_810 ,
Otolemur garnettii	ENSOGAG00000001726	2 retrocopies	retro_ogar_3156, retro_ogar_3183,
Ictidomys tridecemlineatus	ENSSTOG00000012975	1 retrocopy	retro_itri_1853,