RetrogeneDB ID: retro_ogar_766

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873527.1:24034258..24034618(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000027181
• Aliases: None
• Description: None

Sequence

>retro_ogar_766
AATTCAACTACCCAGTGAATTGTAGACATGGGAGAGGCCCCAGGTACCTCGTACCAAGGGGGAAAATTTCACCTTCTGTT
TAGGTTTAGCAGCCAATATCGTTTTGACTTTCCTCAAGTCATGTTTACTGGTGAAAATATTCCTGTTCATCCTCATGTTT
ATAGCAACGGTCAGATCTGTTTATCCATTCTAACAGAAGACTGGTCCCCAGCGCTCTCGGTGCCGTCAGTTTGTCTTAGC
ATTACCAGAAGCATCTTTCCAGCTGCAAGGAAAAGAGACAGCCACCAGATAATTCTTTTTATGTGGGGACATGTTATCAA
TAATCCAGTGGAAACAAAATGGTGGTATCATTATGATACT

Alignment

ORF - retro_ogar_766 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.95 %
• Parental protein coverage: 80.41 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSP
          NS.TQ.IVDM..APGT.Y.G.KF.LLF.FSS.Y.FD.PQVMFTGENIPVHPHVYSNG.ICLSILTEDWSP
Retrocopy NSTTQ*IVDMGEAPGTSYQGGKFHLLFRFSSQYRFDFPQVMFTGENIPVHPHVYSNGQICLSILTEDWSP

Parental  ALSVQSVCLSII-SMLSSCKEK-RRPPDNSFYVRTCNK-NPKKTKWWYHDDT
          ALSV.SVCLSI..S.........R.PPDNSFYV.TC...NP..TKWWYH.DT
Retrocopy ALSVPSVCLSITRSIFPAARKR<RQPPDNSFYVGTCYQ>NPVETKWWYHYDT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_766 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Mus musculus	ENSMUSG00000025939	1 retrocopy	retro_mmus_3516,
Ornithorhynchus anatinus	ENSOANG00000008597	1 retrocopy	retro_oana_106,
Oryctolagus cuniculus	ENSOCUG00000010245	1 retrocopy	retro_ocun_1189,
Otolemur garnettii	ENSOGAG00000004989	3 retrocopies	retro_ogar_2347, retro_ogar_249, retro_ogar_3067,
Otolemur garnettii	ENSOGAG00000027181	2 retrocopies	retro_ogar_460, retro_ogar_766 ,
Procavia capensis	ENSPCAG00000012043	2 retrocopies	retro_pcap_128, retro_pcap_278,