RetrogeneDB ID: retro_ogar_68

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873674.1:954086..954482(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000024080
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000016334
• Aliases: None
• Description: None

Sequence

>retro_ogar_68
CTTGGCCTGGCTGTTGGCGGCCATGGGTCGCTCCTGCCAGACTCCCTAGCCCGCCAGGTGAAGGTGAAGTGGCAGAAGCC
GGACCTTGGTGAGATTCACCGCAAGCTGCGGCCCCAGGGTCCCACACGGCCCCTGTCCAACCCAGGCACTGAACCCGACC
CTGACCTGCCAGGGGGCGGCCTACATCTCTGTCCGGCCTGCGCGAGGTACTTCATCGATTCTGCCAACCTGAAGACCCAC
TTTGGATCCAAAGAGCACAAGAAAAGGCTGAAGCAGTTGAGTATCGAGCCCTACAGTCAGGAAGAGGCAGAGAGGGCAGC
GGGTATGGGTTCCTATGTGTCCCCCAAGAGACTTCCAGTGCCAACAGAAGTGTCCACTGATGTCCCTGAGATGGAC

Alignment

ORF - retro_ogar_68 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.44 %
• Parental protein coverage: 86.76 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SLARQMKARRRKPDLDEIHRELRPQGPTRPLSNPGAEPDPDLPGGGLHRCLACARYFIDSSNLKTHFRSK
          SLARQ.K....KPDL.EIHR.LRPQGPTRPLSNPG.EPDPDLPGGGLH.C.ACARYFIDS.NLKTHF.SK
Retrocopy SLARQVKVKWQKPDLGEIHRKLRPQGPTRPLSNPGTEPDPDLPGGGLHLCPACARYFIDSANLKTHFGSK

Parental  DHKKRLKQLSVEPYSQEEAERAAGMGSYVPPKRLAVPTEVSTDVPEMD
          .HKKRLKQLS.EPYSQEEAERAAGMGSYV.PKRL.VPTEVSTDVPEMD
Retrocopy EHKKRLKQLSIEPYSQEEAERAAGMGSYVSPKRLPVPTEVSTDVPEMD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_68 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000010172	1 retrocopy	retro_mluc_2524,
Macaca mulatta	ENSMMUG00000004682	1 retrocopy	retro_mmul_138,
Otolemur garnettii	ENSOGAG00000016334	3 retrocopies	retro_ogar_300, retro_ogar_3212, retro_ogar_68 ,