RetrogeneDB ID: retro_ogar_646

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873525.1:6252409..6252903(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NUDT3
• Ensembl ID: ENSOGAG00000034590
• Aliases: None
• Description: nudix (nucleoside diphosphate linked moiety X)-type motif 3 [Source:HGNC Symbol;Acc:8050]

Sequence

>retro_ogar_646
ATGATGAAGCTTAAGTCAAACCAGACCCAGACCTACAATGGCAATGGCTACAAGAAGTGGGCTGCATGCCTATGTTTCTG
CAGCAAAAGTGGAGAGTGGTGCTACTTGTGAGCAGTCGTCATCATCCAAACCAATGGATTGTTCTTGGGAGGGGTATGGA
GCCAGGTGTGGCAACAGTTTATGAAGTCTTTGAGGAGGGTGGAGTAAAAGGGTCATTGGGAAGAATAGTTGGAATTTTTG
AGAACCAGGAGAGGAAGCATAGGATGTATGTCTATGTGCAAATTATTATAGAAGGTTGGAAGACTGGGAAGACTCATTAG
ACATCAAAGGCAAAAGAAGTAGTTTATAATAGAAGATGCCATAAGACTGTTGCAGTATCACAAACTTCTGCAGCCACCAT
ATTTTGAAACACTGAAGCAAGGATACTCAGACAACAATAGTACCCAGTTGTGGCTGCTACATACTGGGTTTCTGGTCAGA
GCTCGATGTCAGGC

Alignment

ORF - retro_ogar_646 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.54 %
• Parental protein coverage: 98.84 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MMKLKSNQTRTYDGDGYKKRAACLCFRSESEE-EVLLVSSSRHPDRWIVPGGGMEPEEEPGVAAVREVCE
          MMKLKSNQT.TY.G.GYKK.AACLCF.S.S.E..VLLVSS..HP..WIV.G.GM....EPGVA.V.EV.E
Retrocopy MMKLKSNQTQTYNGNGYKKWAACLCFCSKSGE<VVLLVSSRHHPNQWIVLGRGM----EPGVATVYEVFE

Parental  EAGVKGTLGRLVGIFENQERKHRTYVYVLIVTE-VLEDWEDSVNI-GRKREWFKIEDAIKVLQYHKPVQA
          E.GVKG.LGR.VGIFENQERKHR.YVYV.I..E..LEDWEDS..I..R....F.IEDAI..LQYHK..Q.
Retrocopy EGGVKGSLGRIVGIFENQERKHRMYVYVQIIIE<RLEDWEDSLDI<QRQKK*FIIEDAIRLLQYHKLLQP

Parental  SYFETLRQGYSANNGT-PVVATTYSVSAQSSMSG
          .YFETL.QGYS.NN.T.PVVA.TY.VS.QSSMSG
Retrocopy PYFETLKQGYSDNNST<PVVAATYWVSGQSSMSG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_646 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000015243	1 retrocopy	retro_cjac_655,
Otolemur garnettii	ENSOGAG00000034590	1 retrocopy	retro_ogar_646 ,