RetrogeneDB ID: retro_ogar_537

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873523.1:11271519..11272362(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CNKSR1
• Ensembl ID: ENSOGAG00000016335
• Aliases: None
• Description: connector enhancer of kinase suppressor of Ras 1 [Source:HGNC Symbol;Acc:19700]

Sequence

>retro_ogar_537
ATGGAGCCCGTAGATACCTGGACCCCTGGGAAGGAGGCAGCTTGGCTGAGAGGCCTTGATGAATCCCTGCAGGATGATCC
CTTTGAGAACTGGGAGCTACCTGGCAAGTACCTGTTCTACCTCTGTCCCTGCCATCTCAGGGCTCTGACTGTATGGCCTC
TGGGCCACGAGGAGTTCATCCTGGATGGAGTGGAACAGCTCTGGCCCCTGAGTTCTGGGCTACAGAGGCTGACAGAGGGG
CTTCTGGAAGGGACCCATGCCTTCCAGAGCTTAGTCCAAGTTTGCCTGGGGGACTGTGCCGACGCCCCGGCTGATGTCTC
CAGTGCTGCTATAGAGCTGGTGCATGAGACCCGTGCCCTCCTCTTCTAACTTAACAGGTAGCTCTTCTCCCACATGAATG
ACTTCTCGGCCTGCCAGGAGACTGGGGAACTGTGCAGTGAGTTGGGCCAGGCCTTGCAGGAGGACTGGCCAGCAGCTGAG
AAAGACAGCACAGTCCTGAGCATCTGCAGCCAGGTGGCCAGGATCTGCCACACCATCCGGAGCTGCTGCCCAGAGAAGCT
GCTGGAGCAGAGGGCTGTGCTCAAGCAGGTGCAACTGGATGATCCTTTGGGCCTGGAAATCCAGACCACCACCAACTGTC
AGCACTTTGTGTCCCAAGTGGGCAGCCAGGTCCCCACCAAGTCCCAACTGCAGATCCTGCCTGGAGACGAGATTGTCCAG
ATCAATGAGAAGGTGGTGGTGGGCTAGCCCAGGAAGAACGTGGTGAGGGAGCTGCTTCAGAAGCCAGCCCAGGTGAGCTT
AGTGCTAAAGAAGATCCTTGTGCCAGAGAGCCCGCCAAAGATG

Alignment

ORF - retro_ogar_537 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.47 %
• Parental protein coverage: 90.22 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDPVETWTPGKVAAWLRGLDESLQDYPFENWELPGKYLLQLCPHSLEALTVWPLGHQELILDGVEQLRAL
          M.PV.TWTPGK.AAWLRGLDESLQD.PFENWELPGKYL..LCP..L.ALTVWPLGH.E.ILDGVEQL..L
Retrocopy MEPVDTWTPGKEAAWLRGLDESLQDDPFENWELPGKYLFYLCPCHLRALTVWPLGHEEFILDGVEQLWPL

Parental  SSGLQTENLQSLTEGLLEGTHAFQSLVQGRLGDYAEAPADVLSAAVELVREARALLFWLNRYLFSHINDF
          SSGLQ......L.EG....THAFQSLVQ..LGD.A.APADV.SAA.ELV.E.RALLF.LNR.LFSH.NDF
Retrocopy SSGLQ-RLTEGLLEG----THAFQSLVQVCLGDCADAPADVSSAAIELVHETRALLF*LNR*LFSHMNDF

Parental  SACQEIGELCSELGQALQEDWPAAEKESTVLRICGQVARICHTILSCCPEELLEQRAVLEQVQLDDPLGL
          SACQE.GELCSELGQALQEDWPAAEK.STVL.IC.QVARICHTI.SCCPE.LLEQRAVL.QVQLDDPLGL
Retrocopy SACQETGELCSELGQALQEDWPAAEKDSTVLSICSQVARICHTIRSCCPEKLLEQRAVLKQVQLDDPLGL

Parental  EIQTTNNCQHFVSQVGSQVSTESRLQILPGDEIVQINEQVVVGWPRKNVVRELLREPARVSLVLKKIPVP
          EIQTT.NCQHFVSQVGSQV.T.S.LQILPGDEIVQINE.VVVG.PRKNVVRELL..PA.VSLVLKKI.VP
Retrocopy EIQTTTNCQHFVSQVGSQVPTKSQLQILPGDEIVQINEKVVVG*PRKNVVRELLQKPAQVSLVLKKILVP

Parental  ESPPKV
          ESPPK.
Retrocopy ESPPKM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_537 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000010184	1 retrocopy	retro_mluc_1780,
Otolemur garnettii	ENSOGAG00000016335	1 retrocopy	retro_ogar_537 ,