RetrogeneDB ID: retro_ogar_47

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873520.1:71565719..71566943(+)
• Located in intron of: ENSOGAG00000002355

Retrocopy information

• Ensembl ID: ENSOGAG00000033750
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000016063
• Aliases: None
• Description: None

Sequence

>retro_ogar_47
ATAGCTTTCCCCACAAATAAACCAGAGAGAGAGGCACAACATGTAATAAAAGTGGAGTATCAGGAAAATGGTCCATTATT
TTCTGAACTTAAATTTTATCAGAGGGCTGCAAAAAAAGAATGTATCAAAAAGTGGATAGAGCTCAAACAACTTGATTATT
TAGGAATTCCTATGTTTTATGGATCTGGTCTGACCGAATTCAAGGGAAGGAGTTACAGATTTATGGTAATGGAAAGACTA
GGAATCGATTTACAGAGGATCTCAGACCAGAATGGTACTTTAAAAAAATCCACTGTCCTGCAGCTAGGTATCCGAATGTT
GGATGTACTGGAATATATACATGAAAATGAATATGTTCACGGTGATATAAAAGCAGCAAATCTACTTTTGGGTTACAAAA
ATCCAGATCGGGTTTATCTCGCAGATTATGGACTTTCCTACAGATATTGTCCCATTGGGAACCACAAACAGTATCAGGAA
AATCCTAGAAAAGGCCATAATGGGACAATAGAGTTTACTAGCTTGGATGCCCATAAGGGAGTAGCCCTGTCCAGACGAAG
TGACGTTGAAATCCTTGGCTACTGCATGCTGCGGTGGCTGTGTGGGAAACTTCCCTGGGAAAAGAACCTGAAGGACCCCA
AGGCTGTGCAGACTGCTAAAACAAATCTGTTGGATGAGCTCCCTGAGTCAGTGCTTAATTGGGCTCCTTCTGGAAGCAGT
TGCTATGAAATAGCCCAGTTCTTGGAATGTGCTTATAGTTTAGCATATGACGAAAAGCCAAATTATCAAGAGCTCAAGAA
AATTTTGAACCCGAGTGGCATTCCTTTAGGACCATTGGAATTTTCCACGAAAGAAGAGGGTGTAAATGTGCATACTCCAA
ACAATCAAAGAGTTGATTCACGAAAGGCTGCAACAAAGCAAGTCAATCAGATGCAAAATAGGTTAATAGGAAAAAAAGTC
CACAGTGAAAGAAGTGGTGAGTCCTGTACAACACAGAGGAAAGGGGGAAAGGAGAAGACGCTCATGGGACTGGTGAACAG
TGAAGCAGCTCAGGAAAGCATAAGGAGAAGACAAAAATACCAAGATGCTCAAGAACTTCTGAATGTAGTAAAGCCTTTCC
CACAAAAATTCAGCTATATACAATTCCCAAATTCGTTTTATAAATCTCATGAGGATTTTATCAGTCTAGATACATTTAAC
AAGTCAAGATCTCCGTCTGGGTAT

Alignment

ORF - retro_ogar_47 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.53 %
• Parental protein coverage: 61.99 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LAFPTNKPEREAQHVIKVEYQENGPLFSELKFYQRAAKKECIKKWIELKQLDYLGIPMFYGSGLTEFKGR
          .AFPTNKPEREAQHVIKVEYQENGPLFSELKFYQRAAKKECIKKWIELKQLDYLGIPMFYGSGLTEFKGR
Retrocopy IAFPTNKPEREAQHVIKVEYQENGPLFSELKFYQRAAKKECIKKWIELKQLDYLGIPMFYGSGLTEFKGR

Parental  SYRFMVMERLGIDLQRISDQNGTLKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDRVYL
          SYRFMVMERLGIDLQRISDQNGTLKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDRVYL
Retrocopy SYRFMVMERLGIDLQRISDQNGTLKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDRVYL

Parental  ADYGLSYRYCPIGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEKNL
          ADYGLSYRYCPIGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEKNL
Retrocopy ADYGLSYRYCPIGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEKNL

Parental  KD
          KD
Retrocopy KD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_47 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003299	1 retrocopy	retro_chof_753,
Otolemur garnettii	ENSOGAG00000003253	2 retrocopies	retro_ogar_1195, retro_ogar_825,
Otolemur garnettii	ENSOGAG00000008746	1 retrocopy	retro_ogar_1351,
Otolemur garnettii	ENSOGAG00000011587	1 retrocopy	retro_ogar_246,
Otolemur garnettii	ENSOGAG00000014866	1 retrocopy	retro_ogar_264,
Otolemur garnettii	ENSOGAG00000016063	1 retrocopy	retro_ogar_47 ,
Otolemur garnettii	ENSOGAG00000016785	1 retrocopy	retro_ogar_2000,