RetrogeneDB ID: retro_ogar_264

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873674.1:3821858..3823091(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000014302
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000014866
• Aliases: None
• Description: None

Sequence

>retro_ogar_264
ATGGAGCTGAGAGTCGGGAACAGGTACCGGCTGGGCCGGAAGATAGGCAGTGGCTCCTTCGGAGACATCTATCTCGGTAC
GGACATTGCTGCAGGAGAACAAGTTGCCATGAAGCTTGAATGTGTCAAAACCAAACATCCTCAGCTTCACATCGAGAGCC
GAATCTACAAAATGATACAGGGAGGAGTGGGCATCCCCACCATTAGGTGGTGTGGGGCTGAGGGGGACTACAACGTCATC
GTGATGGAGCTGCTGGGGCCCAGCCTGGAGGACCTCTTCAACTTCTGCTCCAGGAAGTTCAGTCTCAAGACAGTTCTGCT
GCTCGCCGACCAAATGATTAGTCGTATTGAATACCTGCATTCGAAGAACTTCATTCACCAAGACATCAAGCCAGACAACT
TTCTCATGGGGCTGGGGAAGAAAGGCAACCTGGTCTACATCATCGACTTTGGGCTGGCCAAGAAGTACCGGGACGCAAGG
ACCCACCAGCACATCCCCTACCGCGAAAATAAGAACCTGACAGGGACGGCGCGGTATGCCTCCATCAACACCCACCTCGG
CATTGAGCAGTCTCGACGAGATGACTTGGAGTCTTTGGGTTACGTGCTGATGTACTTCAACCTGGGCACTCTCCCCTGGC
AGGGGCTGAAGGCTGCCACCAAGGGGCAGAAGTATGAAAGGATTAGTGAGAAGAAAATGTCCACTCCCATTGAAGTGTTG
TGTAAAGGCTACCCTCCTGAATTTGCCACATACCTGAGTTTCTGCCGCTCCTTGCGTTTTGATGATAAACCCGACTACTC
ATACCTGAGGCAACTCTTCAGGAACCTGTTCCATCGCCAAGGCTTCTCCTATGACTACGTGTTTGACTGGAACATGCTGA
AGTTTGGCGCCACCCGGGCTGCTGATGATACCGAGCGAGAACGGCGGGATCGAGAGGAGAGGATGAGACACTCCCGGAAC
CCAACCACCCGTGGCCTCCCTTCCGCGGCCTCCGGCCGTCCGTGGGTCACCCAAGAAGTGGCTACCCCTACACCTCTCAC
CCCTACCTCACACACGGTTAACACCTCTCCTAGGCCGGTCTCTGGCATGGAACGGGAGCGGAAAGTGAGTATGCGGCTGC
ACCGTGGAGCCCCTGGTGATCCGACAGGCCGACAAGATACTTCTCGCATGTCCACCTCACAGATTCCCGGTCGGGCAGCT
TCCAGCGGTCTTCAGTCTGTCGTGCACCGATGA

Alignment

ORF - retro_ogar_264 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.27 %
• Parental protein coverage: 95.1 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGASWAVPVA
          MELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGE.VA.KLECVKTKHPQLHIES.IYKM.QGG.....P..
Retrocopy MELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEQVAMKLECVKTKHPQLHIESRIYKMIQGGVG--IPTI

Parental  QWVGRQP--HILRVAVLNPALVVSKYNSSLRKFASQSSPVLSPRPISRIEYIHSKNFIHRDVKPDNFLMG
          .W.G............L.P.L.....N...RKF.......L....ISRIEY.HSKNFIH.D.KPDNFLMG
Retrocopy RWCGAEGDYNVIVMELLGPSLE-DLFNFCSRKFSLKTVLLLADQMISRIEYLHSKNFIHQDIKPDNFLMG

Parental  LGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFN
          LGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFN
Retrocopy LGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFN

Parental  LGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLF
          LG.LPWQGLKAATK.QKYERISEKKMSTPIEVLCKGYP.EFATYL.FCRSLRFDDKPDYSYLRQLFRNLF
Retrocopy LGTLPWQGLKAATKGQKYERISEKKMSTPIEVLCKGYPPEFATYLSFCRSLRFDDKPDYSYLRQLFRNLF

Parental  HRQGFSYDYVFDWNMLKFGASRAADDTERERRDREERLRHSRNPATRGLPSTASGRLRGTQEVAPPTPLT
          HRQGFSYDYVFDWNMLKFGA.RAADDTERERRDREER.RHSRNP.TRGLPS.ASGR...TQEVA.PTPLT
Retrocopy HRQGFSYDYVFDWNMLKFGATRAADDTERERRDREERMRHSRNPTTRGLPSAASGRPWVTQEVATPTPLT

Parental  PTSHTANTSPRPVSGMERERKVSMRLHRGAPVNISSSDLTGRQDTSRMSTSQRSRDVASL
          PTSHT.NTSPRPVSGMERERKVSMRLHRGAP........T.R..TS.......S....S.
Retrocopy PTSHTVNTSPRPVSGMERERKVSMRLHRGAPGDPTGRQDTSRMSTSQIPGRAASSGLQSV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_264 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000008792	1 retrocopy	retro_meug_543,
Otolemur garnettii	ENSOGAG00000003253	2 retrocopies	retro_ogar_1195, retro_ogar_825,
Otolemur garnettii	ENSOGAG00000008746	1 retrocopy	retro_ogar_1351,
Otolemur garnettii	ENSOGAG00000011587	1 retrocopy	retro_ogar_246,
Otolemur garnettii	ENSOGAG00000014866	1 retrocopy	retro_ogar_264 ,
Otolemur garnettii	ENSOGAG00000016063	1 retrocopy	retro_ogar_47,
Otolemur garnettii	ENSOGAG00000016785	1 retrocopy	retro_ogar_2000,
Sorex araneus	ENSSARG00000005475	1 retrocopy	retro_sara_33,
Sarcophilus harrisii	ENSSHAG00000007638	2 retrocopies	retro_shar_260, retro_shar_710,