RetrogeneDB ID: retro_ogar_421

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873521.1:29187939..29188756(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000005617
• Aliases: None
• Description: None

Sequence

>retro_ogar_421
TCCTTGCAAAGAGAGACATATGAGGCTAAATATGTGAGTTGCGCTGTTTCTCCTACTCTGGGAATGAAGATCCCCTTCAA
TCCCCCTCTGCTAATGAGGAGGAACCAGCTGATCACTTGTGTTGCCTCTGGGTTTTGTTATCAAGCATATAGTTTACTAC
AGTGAGTCTTTCTGGAGGAAAAAGGATTACTGTGGAACCATGATTACTGAAGGGGAGGAAGCTCCAATTTCCTACACATT
GGATGATACCAAACCTGATGGCAGCTATGCTGCAATAATGGGATTTATCCTTGCCCTCAATGCCAGAAAGGTGGCACGTC
TTACCAAAGAAGAAAGGATGAAGAAACTTTGTGAGCTCTATGCAAAAGTTCTAGGATCCCCAAAAGTTCTGAAACCATCA
CGTTATGAAGAGAAGAACTGATGTGAGGGGCAGTACTCTGGGGGCTGCTACACCACCTACTTCCCCCCTGGGATCATGAC
TCAATATGGAAGGGTACTACGCCAACTAGTGGGCAGGATTTATTTTGCAGGCACTGAGACTGCCGCACACTGGAGGTGTT
ACAAGGAAGGTGCTATGGAGGCTGGGGAGAGAGCAGCCCCAGAGATCCTGCATGCTGTGGGGAAGATTCCAGAGGATGAA
ATCTGGCAGCCAGAACCAAAATCAGTGGATGTCCCTGTGCAACACATACCTACAACCTTCTTGGAGAGACATCTGCCCTC
TGTGCCAGGCCTGGTGTAGCTGACTGGATTGACCAGCATCTTTTCAGCAGTGACCCTGGGCTTCCTGGCACACAAAAAGG
GGCTGCGTGTGCGAGCC

Alignment

ORF - retro_ogar_421 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.88 %
• Parental protein coverage: 53.97 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  TLNHETYEAKYVICAVPPTLGMKIHFSPPLPMMRNQLITRV-PLGSVIKCIVYYNEPFWRKKDYCGTMII
          .L..ETYEAKYV.CAV.PTLGMKI.F.PPL.M.RNQLIT.V.PLG.VIK.IVYY.E.FWRKKDYCGTMI.
Retrocopy SLQRETYEAKYVSCAVSPTLGMKIPFNPPLLMRRNQLITCV>PLGFVIKHIVYYSESFWRKKDYCGTMIT

Parental  EGEEAPISYTLDDTKPDGTYAAIMGFILAHKARKLARLTKEERMKKLCELYAKVLGSQEALKPSHYEEKN
          EGEEAPISYTLDDTKPDG.YAAIMGFILA..ARK.ARLTKEERMKKLCELYAKVLGS...LKPS.YEEKN
Retrocopy EGEEAPISYTLDDTKPDGSYAAIMGFILALNARKVARLTKEERMKKLCELYAKVLGSPKVLKPSRYEEKN

Parental  WCEEQYSGGCYTTYFPPGIMTQYGRVLRQPVGRIYFAGTETATHWSGYMEGAVEAGERAAREILHAVGKI
          .CE.QYSGGCYTTYFPPGIMTQYGRVLRQ.VGRIYFAGTETA.HW..Y.EGA.EAGERAA.EILHAVGKI
Retrocopy *CEGQYSGGCYTTYFPPGIMTQYGRVLRQLVGRIYFAGTETAAHWRCYKEGAMEAGERAAPEILHAVGKI

Parental  PEDEIWQSEPESVDVPARPITTTFLERHLPSVPGLLKLIGLTSIFSAVALGFLAHKKGLLVRA
          PEDEIWQ.EP.SVDVP...I.TTFLERHLPSVPGL..L.GLTSIFSAV.LGFLAHKKGL.VRA
Retrocopy PEDEIWQPEPKSVDVPVQHIPTTFLERHLPSVPGLV*LTGLTSIFSAVTLGFLAHKKGLRVRA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_421 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000005617	4 retrocopies	retro_ogar_2334, retro_ogar_2660, retro_ogar_318, retro_ogar_421 ,