RetrogeneDB ID: retro_ogar_2334

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873612.1:7264201..7265115(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000005617
• Aliases: None
• Description: None

Sequence

>retro_ogar_2334
AGGAAATTTGTGGGTGGATCTGGTCAAGTGAGCAAGTGGATAATGGACCTTCTTGGGGACAGAGTGAAGCTAGAGAGGCC
TGTGATCCACACTGACCAGACAGGAGAAAGTGTCCTTGTGAAGACCCTAAATCGTGAGATGTATGAGGCTAAATATGTGA
TTCACCCTGTTCCTCTTGCTCTGGGAATGAAGATTCACTTCAATCCCACTCAGCCAGTGATGAGGAACCAGCTGATCACT
CGTGTCCTCTGGGTCCAGTTATCAAGTGTATAGTTTACTATAATGAGCCTTTGTAGAGGAAAAAGGATTACTGTGGAACC
ATGATTACTGAAGGGGAGGAAGCTCCAATTTCCTACACTTTGGATGATACCAAACCTAATGGCAGCTATGCTGCAATAAT
GGGATTTATCCTCACCCTCAAAGCCAGAAAGCTGGCCCGTTTTACCAAAGAAGAAAGGATGAAGACACTTTGTGAGCTCT
ATGCAAAAGTTCTAGGCTCCCAAGAAGCTCTGAAACCATCACATTATGAAGAGAAGAACTGGTGTGAGGACCAGTACTCC
AGGGGCTGCTACACCACCTGCTTTCCCCCTGGGATCATGACTCAATATGGAAGGGTACTACGCCAGTCAGCGGGCAGGAT
TGATTTTGCGGGCACTGAGACTGCCACACACTAGAGTGGCTACATGGAGGTAGCTGTGGAGGCTGGGGAGAGAGCAGCCC
GGGAGATCCTGCATACTGTGAGAAAGATTCCAGAGGATGAAATCTGGCAGCCAGAACCAGAATCGGTGGATGTCCCTGCG
CGACCCATCACTACAACCTTGGAGAGACATCTGCCCTCTGTGCCAGGCCTGCTGAAGCTGATTGGATTGACCAGCATCTT
TTCAGCAGTGGCTCTGGGCTTCCTAGCAGAAAAA

Alignment

ORF - retro_ogar_2334 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.97 %
• Parental protein coverage: 60.71 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  RKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTGENVLAKTLNHETYEAKYVICAVPPTLGMKIHFSPP
          RKFVGGSGQVS..IMDLLGDRVKLERPVI..DQTGE.VL.KTLN.E.YEAKYVI..VP..LGMKIHF.P.
Retrocopy RKFVGGSGQVSKWIMDLLGDRVKLERPVIHTDQTGESVLVKTLNREMYEAKYVIHPVPLALGMKIHFNPT

Parental  LPMMRNQLITRV-PLGSVIKCIVYYNEPFWRKKDYCGTMIIEGEEAPISYTLDDTKPDGTYAAIMGFILA
          .P.MRNQLITRV.PLG.VIKCIVYYNEP..RKKDYCGTMI.EGEEAPISYTLDDTKP.G.YAAIMGFIL.
Retrocopy QPVMRNQLITRV<PLGPVIKCIVYYNEPL*RKKDYCGTMITEGEEAPISYTLDDTKPNGSYAAIMGFILT

Parental  HKARKLARLTKEERMKKLCELYAKVLGSQEALKPSHYEEKNWCEEQYSGGCYTTYFPPGIMTQYGRVLRQ
          .KARKLAR.TKEERMK.LCELYAKVLGSQEALKPSHYEEKNWCE.QYS.GCYTT.FPPGIMTQYGRVLRQ
Retrocopy LKARKLARFTKEERMKTLCELYAKVLGSQEALKPSHYEEKNWCEDQYSRGCYTTCFPPGIMTQYGRVLRQ

Parental  PVGRIYFAGTETATHWSGYMEGAVEAGERAAREILHAVGKIPEDEIWQSEPESVDVPARPITTTFLERHL
          ..GRI.FAGTETATH.SGYME.AVEAGERAAREILH.V.KIPEDEIWQ.EPESVDVPARPITTT.LERHL
Retrocopy SAGRIDFAGTETATH*SGYMEVAVEAGERAAREILHTVRKIPEDEIWQPEPESVDVPARPITTT-LERHL

Parental  PSVPGLLKLIGLTSIFSAVALGFLAHK
          PSVPGLLKLIGLTSIFSAVALGFLA.K
Retrocopy PSVPGLLKLIGLTSIFSAVALGFLAEK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2334 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000005617	4 retrocopies	retro_ogar_2334 , retro_ogar_2660, retro_ogar_318, retro_ogar_421,