RetrogeneDB ID: retro_ogar_323

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873520.1:18835593..18836723(+)
• Located in intron of: ENSOGAG00000010597

Retrocopy information

• Ensembl ID: ENSOGAG00000032915
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000009416
• Aliases: None
• Description: None

Sequence

>retro_ogar_323
ATGGAGAAGCTGAGTGCAGCAAACAACCACTTCACCTTAGACCTGTTCCGTGCCTTAAATGAAGACAATCCGACTGGAAA
CATCTTCGTCTTTCCCTTCAGCATTTCATCAGCGATGGCCATGGTCTTTCTAGGGACCAGAGGCAACACTGCAGCACAAC
TATCCAAGACTTTGCATTTCAATATGGTTGAGGAGATTCATTCAAGATTTCAGAATCTGAATGCTGATATCAACAAAAGT
GGAGCACCCTACATTCTGAAACTTGCTAATAGATTATATGGAGAGAAAATCTTTAATTCCTCACTGAGTTCTTGGATTCG
ACTCAGAAAATGTATGGTGCTGAACTGGCCAGTGCAGACTTTCAGAATGCCTCTGAAGATGCAAGGAAAACCATAAACCA
GTGGGTGAAAGGACAGACGGAAGGGAAAATTCTGGAACTGTTGGCTAAAGATATGGTTGGTAGCATGACTAAACTTGTGT
TAGTGAATGCCATCTATTTCAAGGGAAACTGGCAGAATCAATTCAGGAAAAAAGACACAGCCAATGCACCATTCAGATTG
AATAAGAAAGACACAAAAACAGTGAAAATGATGTATCAGGAGAAAGCATTTCCATTTGGCTACATCGAGGACTTTAAGAC
CCGTGTGCTGGAACTGCCTTACCAGGGCGAGGAGCTGAGCATGCTCATTCTGCTGCCCTACGACATCGAGGATGACTCCA
CGGGCCTGAAGAAGGTTGAGGAGCAACTGACTTTGGCAAAACTGCAGGAGTGGACCAAGCATTTGGCAGTCACTCAAGTC
AATGTTGGCTTACCCTGGTTCAAACTGAAAGACAGCTATGTCCTCAACAACCACCTCACCCGCCTGGGTGTGGAGGACCT
GTTTGATAGCAGCGAGGCTGATCTGTCTGGCATGTCAGGAGCCAGCGGTATTTTTGTATCAAAAATTGTCCACAAGTCCT
TTGTGGAAGTGAATGAAAAGTGTACAGAGGCAGCGGCTGCAACAGCAGTGGAGGTTTTCTTCTGTAGCAAGATGTCAGGG
GAAACTTTCATTGCCAACCATCCATTCCTTTTCTTTATTTGGCACAATCCCTCAGCCAGCATCCTGTTCATGGGCAGATA
TTCTTCCCCA

Alignment

ORF - retro_ogar_323 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.98 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MEKLSAANNHFALDLFRALNEDNPTGNIFISPFSISSVMAMIFLGTRGNTAAQLSKTLHFNTVEEIHSRF
          MEKLSAANNHF.LDLFRALNEDNPTGNIF..PFSISS.MAM.FLGTRGNTAAQLSKTLHFN.VEEIHSRF
Retrocopy MEKLSAANNHFTLDLFRALNEDNPTGNIFVFPFSISSAMAMVFLGTRGNTAAQLSKTLHFNMVEEIHSRF

Parental  QSLHADINKSGAPYILKLANRLYGEKTYN-FLTEFLDSTQKMYGAELASVDFQNAYEDARKTINQWVKGQ
          Q.L.ADINKSGAPYILKLANRLYGEK..N.FLTEFLDSTQKMYGAELAS.DFQNA.EDARKTINQWVKGQ
Retrocopy QNLNADINKSGAPYILKLANRLYGEKIFN<FLTEFLDSTQKMYGAELASADFQNASEDARKTINQWVKGQ

Parental  TEGKIPELLAEGVVDSMTKLVLVNAIYFKGNWQNRFTKKATANAPFRLNKKDTKTVKMMYQEKAFPFGYI
          TEGKI.ELLA...V.SMTKLVLVNAIYFKGNWQN.F.KK.TANAPFRLNKKDTKTVKMMYQEKAFPFGYI
Retrocopy TEGKILELLAKDMVGSMTKLVLVNAIYFKGNWQNQFRKKDTANAPFRLNKKDTKTVKMMYQEKAFPFGYI

Parental  EDLKTRVLELPYQGKELSMLILLPEYLIEEKTHMTFIEEQLTLEKLQEWTKHLKVTEVNVGLPRFKLEDS
          ED.KTRVLELPYQG.ELSMLILLP.......T.....EEQLTL.KLQEWTKHL.VT.VNVGLP.FKL.DS
Retrocopy EDFKTRVLELPYQGEELSMLILLPYDIEDDSTGLKKVEEQLTLAKLQEWTKHLAVTQVNVGLPWFKLKDS

Parental  YVLNNHLTRLGVEDLFNSTKADLSGMSGARGLFVSKIVHKSFVEVNEKGTEAAAATAGVVAFCSSMSGKT
          YVLNNHLTRLGVEDLF.S..ADLSGMSGA.G.FVSKIVHKSFVEVNEK.TEAAAATA..V.FCS.MSG.T
Retrocopy YVLNNHLTRLGVEDLFDSSEADLSGMSGASGIFVSKIVHKSFVEVNEKCTEAAAATAVEVFFCSKMSGET

Parental  FIADHPFLFFIRHNPSASILFMGRYSSP
          FIA.HPFLFFI.HNPSASILFMGRYSSP
Retrocopy FIANHPFLFFIWHNPSASILFMGRYSSP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_323 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000016858	1 retrocopy	retro_mluc_315,
Otolemur garnettii	ENSOGAG00000009416	1 retrocopy	retro_ogar_323 ,
Rattus norvegicus	ENSRNOG00000016581	1 retrocopy	retro_rnor_1895,