RetrogeneDB ID: | retro_ogar_3176 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873736.1:2240802..2241162(+) | ||
| Located in intron of: | ENSOGAG00000028075 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSOGAG00000002298 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ogar_3176
ATGGCAGCCGACAAAGAAGATGGCGCAGCTTCAGATCCAGAGATTTCCAAAAATGGTGTCAGCAAAAGCACAAAATCTGG
GGAGGACCTAGCAGTCCAGGTTCCCGTGGTGGATGTGCAAAGCAACAATTTCAAGGAGATGTGGCCATCCCTCCTGCTGG
CCATAAAGATAGCTAACTTTGTGGCTATGGACATGGAGCTGAGTGGGCTTGGGGACAGGAAGAGTTTGCTGAACCAGTGC
ATTGAAGCACAGTACAAGGCTGTGTGTCATGCTGCCAGGACCTGTTCTATCCTCTCCCTGGGCCTTGCCTGCTTCAAGCA
GCAGCTAGACAAGGGAGAGCATTCCTACCTGGCAAGTCTT
ORF - retro_ogar_3176 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 90.0 % |
| Parental protein coverage: | 54.79 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MAADKEDGAASDPAVSEDGVSKSTKSGEDLAVQVPVVDVQSNNFKEMWPSLLLAIKTANFVAVDTELSGL |
| MAADKEDGAASDP..S..GVSKSTKSGEDLAVQVPVVDVQSNNFKEMWPSLLLAIK.ANFVA.D.ELSGL | |
| Retrocopy | MAADKEDGAASDPEISKNGVSKSTKSGEDLAVQVPVVDVQSNNFKEMWPSLLLAIKIANFVAMDMELSGL |
| Parental | GDRKSLLNQCIEERYKAVCHAARTRSILSLGLACFKQQLDKGEHSYLAQV |
| GDRKSLLNQCIE..YKAVCHAART.SILSLGLACFKQQLDKGEHSYLA.. | |
| Retrocopy | GDRKSLLNQCIEAQYKAVCHAARTCSILSLGLACFKQQLDKGEHSYLASL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_3176 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000013614 | 1 retrocopy | |
| Otolemur garnettii | ENSOGAG00000002298 | 3 retrocopies |
retro_ogar_2153, retro_ogar_2280, retro_ogar_3176 ,
|