RetrogeneDB ID: retro_ogar_2153

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873596.1:9044078..9044642(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000002298
• Aliases: None
• Description: None

Sequence

>retro_ogar_2153
ATGGCTGCTGACAACGAAGATGGTGAGCTTTGGTTCCATTGACTTCCTACAGTGGTGTCAACAAGCGCACAAAATCTAGG
GAGGACCTAGCAGTCCAGGTTCCCGTGATGCATGTGCAAAGCAACAACTTCAAGGAGATGTGGCCATCCCTTCTGCTGGC
CATGAAGGCAGCTAACTTCGTGGCTGTGGACATGAAGCTGAGTGGGCCTGGGGACAGGAAGAGTTTGCCGAACCAGTATA
TTGAGGAACATTACAAGGCTGTGTGTCATGCTGCCAAGGCCCATTCTACCCTTTTCCTGGGCCTTGTCTGCTTCAAGCAG
CAGCTAGGCAAGGGTGAACATTCCTACCTGGCTCAAGTGTTCAATCTCACCCTATTGTGCATGGAGGGGTATGTCACAGA
ACCAAAGTCTGTACAGTTCCTGGTACAGCTTGGCTTCAACTTTAACCAGCAGTATGCCCAGGGCATCCCCCACCGTAAGG
GCAATGACAAGGGTGATGAGAGTCAGAGCCTGTCAGTTATGGACACTGTTCCTGGAACTGATCTGGGCCCACTGGCCCCT
AATG

Alignment

ORF - retro_ogar_2153 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.95 %
• Parental protein coverage: 85.84 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MAADKEDGA-ASDPAVSEDGVSKSTKSGEDLAVQVPVVDVQSNNFKEMWPSLLLAIKTANFVAVDTELSG
          MAAD.EDG..A..P..S..GV.K.TKS.EDLAVQVPV..VQSNNFKEMWPSLLLA.K.ANFVAVD..LSG
Retrocopy MAADNEDGE<ALVPLTSYSGVNKRTKSREDLAVQVPVMHVQSNNFKEMWPSLLLAMKAANFVAVDMKLSG

Parental  LGDRKSLLNQCIEERYKAVCHAARTRSILSLGLACFKQQLDKGEHSYLAQVFNLTLLCMEEYVIEPKSVQ
          .GDRKSL.NQ.IEE.YKAVCHAA...S.L.LGL.CFKQQL.KGEHSYLAQVFNLTLLCME.YV.EPKSVQ
Retrocopy PGDRKSLPNQYIEEHYKAVCHAAKAHSTLFLGLVCFKQQLGKGEHSYLAQVFNLTLLCMEGYVTEPKSVQ

Parental  FLVQHGFNFNQQYAQGIPYHKGNDKGDESQSLSVR-TLFLELIRARRPLV
          FLVQ.GFNFNQQYAQGIP..KGNDKGDESQSLSV..TLFLELI.A..PL.
Retrocopy FLVQLGFNFNQQYAQGIPHRKGNDKGDESQSLSVM>TLFLELIWAHWPLM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2153 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000013614	1 retrocopy	retro_mmur_1425,
Otolemur garnettii	ENSOGAG00000002298	3 retrocopies	retro_ogar_2153 , retro_ogar_2280, retro_ogar_3176,