RetrogeneDB ID: retro_ogar_291

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873573.1:9754836..9755694(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000024477
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000002879
• Aliases: None
• Description: None

Sequence

>retro_ogar_291
ATGTCTGACAAGGGGCTCACGGAGGACTCGGGAGCCCCGCGGCTCCCCAACACCCTCAGGGATAGTAGTCCAAGAAGGAG
CTTCGGACCTTGTGGATGGATTTTAGTGGCTGTCTCGTTCTTAGTCACCCTTATAACGTTCCCAATCTCGATGTGGCTGT
GCATTAAGATCATAAAAGAGTATGAAAGAGCCATCATCTTTAGACTGGGTCACATTTTACAAGGAGGAGCCAAAGGCCCT
GGCATGGTTTTTGTTCTGCCGTGTACTGACAGCTTCGTCAGGGTGGATATGAGGACTGTTTCCTTTGACATTCCTCCTCA
GGAGATCCTGAGTAAGGACTCGGTGTCGGTTAGGGTGGACGGCGTGGTCTACTACCGCGTTCAGGACGCCAGGCTGGCGG
TGATCAACATCACCAACGCCGACTCCGCCACCCGCCTGCTGGCGCAGACCACGCTGAGGAACGTTCTGGGCACCAAGAGC
CTCTCTCAAATTCTTTCCGACAGAGAAGAAATTGCACGCAACATGCACTGTACTCTGGCCAGCGCCACTGACGACTGGGG
AATAAAGGTGGAGCGTGTGGATATTAAGGACGTGAAACTACCTGTGCAGCTCCAGAGAGCTATGGCTGCAGAAGCGGAAG
CAGCCAGGGAGGCCAGAGCCAAGGTCATTGCAGCTGAAGGAGAAATGAATGCATCCAGGGCTCTGAAGGAAGCCTCCATG
ATCATGACTCAATCTCCGGCAGCCCTGGAGCTCCGATACCTTCAGACACTTAATACCATCGCTGCTGAGAAGAACTCAAC
GATTATCTTCCCTCTGCCCATCGATATATTGCAAGTCATCATAGGGGCAAAACACTGA

Alignment

ORF - retro_ogar_291 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.55 %
• Parental protein coverage: 99.62 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SPSKGLGLCGWILVAVSFLFTLVTFPISIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSF
          SP....G.CGWILVAVSFL.TL.TFPIS.W.CIKIIKEYERAIIFRLG.ILQGGAKGPG..F.LPCTDSF
Retrocopy SPRRSFGPCGWILVAVSFLVTLITFPISMWLCIKIIKEYERAIIFRLGHILQGGAKGPGMVFVLPCTDSF

Parental  IKVDMRTISFDIPPQEILTKDSVTVSVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLS
          ..VDMRT.SFDIPPQEIL.KDSV.V.VDGVVYYRVQ.A.LAV.NITNADSATRLLAQTTLRNVLGTK.LS
Retrocopy VRVDMRTVSFDIPPQEILSKDSVSVRVDGVVYYRVQDARLAVINITNADSATRLLAQTTLRNVLGTKSLS

Parental  QILSDREEIAHNMQCTLDDATDEWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEGEMNAS
          QILSDREEIA.NM.CTL..ATD.WGIKVERV.IKDVKLPVQLQRAMAAEAEA.REARAKVIAAEGEMNAS
Retrocopy QILSDREEIARNMHCTLASATDDWGIKVERVDIKDVKLPVQLQRAMAAEAEAAREARAKVIAAEGEMNAS

Parental  RALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGIIGAKH
          RALKEASM..T.SPAAL.LRYLQTL.TIAAEKNSTI.FPLPID.LQ.IIGAKH
Retrocopy RALKEASMIMTQSPAALELRYLQTLNTIAAEKNSTIIFPLPIDILQVIIGAKH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_291 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000015723	1 retrocopy	retro_dnov_2496,
Nomascus leucogenys	ENSNLEG00000017145	1 retrocopy	retro_nleu_647,
Otolemur garnettii	ENSOGAG00000002879	2 retrocopies	retro_ogar_2886, retro_ogar_291 ,
Oreochromis niloticus	ENSONIG00000013021	1 retrocopy	retro_onil_33,