RetrogeneDB ID: retro_ogar_2886

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873676.1:2904350..2904833(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000002879
• Aliases: None
• Description: None

Sequence

>retro_ogar_2886
TACCTGGTTCAGAATGCAACCCTAGTTGTGGCAAATATCAGTAACCTTGACTCAGGAACCTGTCTTTTGACACAAACTCC
CCTGAAGAACATTTTGGGCAGCAAGAACCTCTCTCAGATACTTTCAGACAGAGAAGAAATTGCACACAACATGCAGTGTA
CTCTGGATGACACCACTGATGACTGGGTGATGAAGGTGTAGCGTGTTGAAATTAAGGACATGAAACTACCTGTGCTGCTC
CAGAGAGCTATGGCTGCAGAAGCAGAAGCATACTAGGGGGCCAGAGCCACAGTCATTGCAGCCGATGGAAAAATGAATGC
ATCCATGGCATTAAAAGGAGCCTCTGTGATCATCACTGAATCTCCAGGTGGCTCTGTAGCTTAGATAACTTTAGACACTG
ACCACCATTGCTGCTGAGAAAAACTCAAGGATTGTCTTCCCTCTGCTTATGGTATATTACAAGGCATCATAGAAGCAATA
CAC

Alignment

ORF - retro_ogar_2886 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.85 %
• Parental protein coverage: 60.98 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  YRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDEWGIKVERVE
          Y.VQNATL.VANI.N.DS.T.LL.QT.L.N.LG.KNLSQILSDREEIAHNMQCTLDD.TD.W..KV.RVE
Retrocopy YLVQNATLVVANISNLDSGTCLLTQTPLKNILGSKNLSQILSDREEIAHNMQCTLDDTTDDWVMKV*RVE

Parental  IKDVKLPVQLQRAMAAEAEASREARAKVIAAEGEMNASRALKEASMVITESP-AALQLRYLQTLTTIAAE
          IKD.KLPV.LQRAMAAEAEA...ARA.VIAA.G.MNAS.ALK.AS..ITESP..AL.LR.L.TLTTIAAE
Retrocopy IKDMKLPVLLQRAMAAEAEAY*GARATVIAADGKMNASMALKGASVIITESP>VAL*LR*L*TLTTIAAE

Parental  KNSTIVFPL-PIDMLQGIIGAKH
          KNS.IVFPL.....LQGII.A.H
Retrocopy KNSRIVFPL<AYGILQGIIEAIH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2886 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000015723	1 retrocopy	retro_dnov_2496,
Nomascus leucogenys	ENSNLEG00000017145	1 retrocopy	retro_nleu_647,
Otolemur garnettii	ENSOGAG00000002879	2 retrocopies	retro_ogar_2886 , retro_ogar_291,
Oreochromis niloticus	ENSONIG00000013021	1 retrocopy	retro_onil_33,