RetrogeneDB ID: retro_ogar_2864

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873673.1:3160584..3161025(+)
• Located in intron of: ENSOGAG00000016235

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000031713
• Aliases: None
• Description: None

Sequence

>retro_ogar_2864
GACCTGATGGCGTGTGTGTCTCCACAGGACTATCTGCAAATAATCGAGACCCTCGGTGACAGCTGACTTATCCTCTGAAT
TAGGAAAGGAACAGTGGCACCTGAATCGTTCCAAACTGAGTCATTTACTCAGGAGGTTTATAGGTACAAGGATTCCGTAA
AAGAAGACTTTTGGAAGGCAGATATTGTCATTAGTCACACAGGGGCAGGAACCTGTTTGGAGTCTCGGGAAAAAGGGTAG
TGGTTATAAACAGAAAGTTAATGAACAATCATCATCTGGAATTGCCACAGCCGTCCACAAAGAGGGGCGTCTCTTCCACT
GTCCCTGCAGCAGCTTCCTGGGCTGCCACAGTCAACGGACTTATCGATGCTGAAATGTTATCCTCCTGGCCAGACAGAAA
AATTTTCTGCATTTTTGGATAAAGTCATTGGATTACAAAAA

Alignment

ORF - retro_ogar_2864 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.13 %
• Parental protein coverage: 91.52 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  DLIACVSSHDCLQIIESLGYSRLILQIGRGTVAPEPFRTESFALDVYRYKDSVKEDLRKADLVISHAGAG
          DL.ACVS..D.LQIIE.LG.S.LIL.I..GTVAPE.F.TESF...VYRYKDSVKED..KAD.VISH.GAG
Retrocopy DLMACVSPQDYLQIIETLGDS*LIL*IRKGTVAPESFQTESFTQEVYRYKDSVKEDFWKADIVISHTGAG

Parental  TCLECLEKGKP-LVVVVNEQLMNNHQLEL-AKQLHKEGHLFYCTCST-LPGLLQSMDLSTLKCYPPGQPE
          T...CLE......VVV.N..LMNNH.LEL.A...HKEG.LF.C.CS..LPGL.QS.DLS.LKCYPPGQ.E
Retrocopy T---CLESREK<RVVVINRKLMNNHHLEL<ATAVHKEGRLFHCPCSS<LPGLPQSTDLSMLKCYPPGQTE

Parental  KFSAFLDKVVGLQK
          KFSAFLDKV.GLQK
Retrocopy KFSAFLDKVIGLQK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2864 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000005175	1 retrocopy	retro_mdom_1156,
Mus musculus	ENSMUSG00000041718	1 retrocopy	retro_mmus_256,
Oryctolagus cuniculus	ENSOCUG00000000232	2 retrocopies	retro_ocun_1459, retro_ocun_477,
Otolemur garnettii	ENSOGAG00000031713	2 retrocopies	retro_ogar_2864 , retro_ogar_3363,
Tupaia belangeri	ENSTBEG00000010726	2 retrocopies	retro_tbel_117, retro_tbel_6,