RetrogeneDB ID: retro_ogar_2742

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873659.1:1105812..1106271(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RNF181
• Ensembl ID: ENSOGAG00000012284
• Aliases: None
• Description: ring finger protein 181 [Source:HGNC Symbol;Acc:28037]

Sequence

>retro_ogar_2742
ATGGCATCCTATTTTGATGAACACGACTGCGAATCGCTGGATGCCGAGCAAGAGACAGGAACCAACATGCTACTGGAGCT
TGCAAGATCACTTTTCCGTAGCGTGGACTCTGAAGATTTGGGGTTGATTGTAGATTGAGAACACCGCCTGCCTCCACCTG
CTGCCAAGACCGTGGTCGAGAACCTCCCCAGGACAATTATCAGAGACTCTCAGGCTAAGCTCAAGTGCCCTGTGTGCCTT
TTGGAATTTGAGGAGGAGGAGACTGTCACTGAGATGCCTTGAAATCACCTCTTCCATTTCAACTGCATTCTGCCCTGGCT
AAGACAGACAAATTCTTGCCCCCTGTGCCGCCATAAGCGGCCCACTGATGATGATGCTTATGAAAAGCATAGACGAGACA
AGGCTCAAAAGCAGCAGCAGCAGCAGCAACAACTGGAGAACCTCCACGCAGCCATGTAC

Alignment

ORF - retro_ogar_2742 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.43 %
• Parental protein coverage: 99.35 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MASYFDEHDCESLDGEQEMRTNMLLELARSLFHSVDFEDLRLIVDWEHRLPPPAAKTVVQNLPRRIIRGP
          MASYFDEHDCESLD.EQE..TNMLLELARSLF.SVD.EDL.LIVD.EHRLPPPAAKTVV.NLPR.IIR..
Retrocopy MASYFDEHDCESLDAEQETGTNMLLELARSLFRSVDSEDLGLIVD*EHRLPPPAAKTVVENLPRTIIRDS

Parental  QAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDTYEEHRREKAR-KQQ
          QA.LKCPVCLLEFEEEETV.EMP..HLFH.NCILPWL..TNSCPLCRH..PTDDD.YE.HRR.KA.....
Retrocopy QAKLKCPVCLLEFEEEETVTEMP*NHLFHFNCILPWLRQTNSCPLCRHKRPTDDDAYEKHRRDKAQXXXX

Parental  QQQRLENLRAAMY
          ....LENL.AAMY
Retrocopy XXXQLENLHAAMY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2742 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000019647	3 retrocopies	retro_cjac_2423, retro_cjac_355, retro_cjac_3849,
Otolemur garnettii	ENSOGAG00000012284	1 retrocopy	retro_ogar_2742 ,
Pongo abelii	ENSPPYG00000012225	2 retrocopies	retro_pabe_3083, retro_pabe_807,