RetrogeneDB ID: retro_ogar_261

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873558.1:9668616..9670275(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000031593
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: GK
• Ensembl ID: ENSOGAG00000016952
• Aliases: None
• Description: glycerol kinase [Source:HGNC Symbol;Acc:4289]

Sequence

>retro_ogar_261
ATGGCAGCCCCCCAGAAACCAGCTGCCGGGCCGTTGGTGGGGGCCGTGGTCCAGGGCACCAACTCCACTCGCTTCCTGGT
TTTCAACTCAAAAACTGCGGAACTACTTACTCATCATCAAGTGGAAGTAGCCCAGGAGTACCCCAAAGAAGGATGGGTGG
AACAAGACCCGAAGGAAATCCTGCAGTCGGTCTATGAGTGTATAGAGAGAACGTGCGAGAAACTTAAGGAGCAGAACATC
GACATAGCCAACATAAAGGCTGTTGGCGTCAGCAATCAGAGGGAAACCACCGTGGTGTGGGACAAGCTAAGCGGGGAGCC
GCTCTATAATGCCGTGGTGTGGCTTGATCTAAGAACCCAGTCGACTGTGGAGAGCCTTTCAAAGAAAATCCCGGGCAATA
ATAACTTTGTCAAGTCTAAGACAGGCCTTCCACTCAGCACTTACTTCAGTGCAGTGAAACTTCGTTGGATGCTTGACAAT
GTGCTAGATGTTCAAAAGGCTGTCGAAGAAGGAAGAGCTCTTTTCGGCACCCTCGATTCATGGCTCATCTGGAGTATGAC
AGGAGGAGTAAACGGAGGTGTGCATTGTACAGATGTAACAAATGCAAGTAGGACAATGCTTTTCAACATCCATTCTTTGG
AATGGGATGCAGAGCTCTGTAAGTTTTTTGACGTTCCAATGGACATTCTTCCAAATGTCTGGAGTTCTTCTCAGATCTAT
GGCCAAATAAAAGGTGGGACCTTGGAAGGTGTGCCAATATCTGGGTGTTTGGGGGATCAGTCCGCTGCATTGGTAGGACA
AATGTGCTTCCAGGAAGGACAAGCCAAAAGCACATATGGAACAGGCTGTTTCTTACTGTGTAATACAGGTCGTAAGTGTG
TGTTTTCTGAACATGGACTTCTGACCACTGTGGCTTACAAACTAGGCAAAGACAAGCCAGTACATTATGCCTTGGAAGGT
TCTGTTGCTATAGCTGGTGCTGTTATTCGTTGGCTAAGAGACAATCTTGGAATCATAGAGACCTCTGAAGAAATTGAAAC
ACTTGCTAAAGAAGCAGGTACTTCTTATGGCTGCTACTTTGTCCCAGCCTTTTCAGGGTTATATGCACCTTATTGGGAGC
CCAGTGCAAGAGGGATAATCTGTGGTCTCACTCAGTTTACCAATAAATGTCATATTGGTTTTGCTGCATTAGAAGCTGTT
TGTTTTCAAACCCGAGAAATTCTGGATGCCATGAACCGAGACTGTGGAATTCCACTTACTCATTTGCAGGTGGATGGAGC
AATGACGGTCAACCAAATTCTTATGCAACTACTAGCAGATATTCTGCACATTCCAGTGATAAAGTCGTCTATGTCTGAAA
CAACCGCACTGGGCGCTGCCATGGCAGCAGGAGCTGCAGAAGGAGTAGGTGTCTGGAGTCTTAAACCCGAGGATTTGTCT
GTCATTGGGATGGTCCGATTTGAACCACAGATCCAAGCCACAGAAAGTGAAATTCGTTACTCTACATGGAAGAAAGCTGT
GATGAAGTCAATGGATTCTGTTCCATCTCAGTCTCCCCAAGAAGACTTTTCTATCTTCTCTAGTCTGCCTTTGGGTTTTT
TTATAGTGAGTAGCATGGTGATGTTAATTGGAGCAAGATACATCTCAGGTATCCCATAA

Alignment

ORF - retro_ogar_261 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.26 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAAAKKAVLGPLVGAVDQGTSSTRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECVEK
          MAA..K...GPLVGAV.QGT.STRFLVFNSKTAELL.HHQVE..QE.P.EGWVEQDPKEILQSVYEC.E.
Retrocopy MAAPQKPAAGPLVGAVVQGTNSTRFLVFNSKTAELLTHHQVEVAQEYPKEGWVEQDPKEILQSVYECIER

Parental  TCEKLGQLNIDISNIKAIGVSNQRETTVVWDKLTGEPLYNAVVWLDLRTQSTVEALSKRIPGNNNFVKSK
          TCEKL...NIDI.NIKA.GVSNQRETTVVWDKL.GEPLYNAVVWLDLRTQSTVE.LSK.IPGNNNFVKSK
Retrocopy TCEKLKEQNIDIANIKAVGVSNQRETTVVWDKLSGEPLYNAVVWLDLRTQSTVESLSKKIPGNNNFVKSK

Parental  TGLPISTYFSAVKLRWILDNVRQVQKAVEENRALFGTIDSWLIWSLTGGVNGGVHCTDVTNASRTMLFNI
          TGLP.STYFSAVKLRW.LDNV..VQKAVEE.RALFGT.DSWLIWS.TGGVNGGVHCTDVTNASRTMLFNI
Retrocopy TGLPLSTYFSAVKLRWMLDNVLDVQKAVEEGRALFGTLDSWLIWSMTGGVNGGVHCTDVTNASRTMLFNI

Parental  HSLEWDKELCEFFGIPMEILPNVRSSSEIYGLMKAGALEGVPISGCLGDQSAALVGQMCFLDGQAKNTYG
          HSLEWD.ELC.FF..PM.ILPNV.SSS.IYG..K.G.LEGVPISGCLGDQSAALVGQMCF..GQAK.TYG
Retrocopy HSLEWDAELCKFFDVPMDILPNVWSSSQIYGQIKGGTLEGVPISGCLGDQSAALVGQMCFQEGQAKSTYG

Parental  TGCFLLCNTGRKCVFSEHGLLTTVAYKLGRDKPVFYALEGSVAIAGAVIRWLRDNLGIIKTSDEIEKLAK
          TGCFLLCNTGRKCVFSEHGLLTTVAYKLG.DKPV.YALEGSVAIAGAVIRWLRDNLGII.TS.EIE.LAK
Retrocopy TGCFLLCNTGRKCVFSEHGLLTTVAYKLGKDKPVHYALEGSVAIAGAVIRWLRDNLGIIETSEEIETLAK

Parental  EAGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNRDCGIPLS
          EAGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHI.FAALEAVCFQTREILDAMNRDCGIPL.
Retrocopy EAGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIGFAALEAVCFQTREILDAMNRDCGIPLT

Parental  HLQVDGGMTSNKILMQLQADILYIPVVKPSMPETTALGAAMAAGAAEGVGVWSLAPEDLSAVTMERFEPQ
          HLQVDG.MT.N.ILMQL.ADIL.IPV.K.SM.ETTALGAAMAAGAAEGVGVWSL.PEDLS...M.RFEPQ
Retrocopy HLQVDGAMTVNQILMQLLADILHIPVIKSSMSETTALGAAMAAGAAEGVGVWSLKPEDLSVIGMVRFEPQ

Parental  INAEESEIRYSTWKKAVKKSMGWVTTQSPESGDPSIFCSLPLGFFIVSSMVMLIGARYISGQP
          I.A.ESEIRYSTWKKAV.KSM..V..QSP...D.SIF.SLPLGFFIVSSMVMLIGARYISG.P
Retrocopy IQATESEIRYSTWKKAVMKSMDSVPSQSPQE-DFSIFSSLPLGFFIVSSMVMLIGARYISGIP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_261 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000003261	2 retrocopies	retro_cpor_11, retro_cpor_20,
Felis catus	ENSFCAG00000004264	1 retrocopy	retro_fcat_140,
Monodelphis domestica	ENSMODG00000002417	1 retrocopy	retro_mdom_234,
Otolemur garnettii	ENSOGAG00000016952	1 retrocopy	retro_ogar_261 ,
Sarcophilus harrisii	ENSSHAG00000006470	1 retrocopy	retro_shar_35,