RetrogeneDB ID: retro_ogar_232

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873591.1:467436..468183(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000007432
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000005976
• Aliases: None
• Description: None

Sequence

>retro_ogar_232
ATGTTCCACTTTGTGAGCAATGCAGAGCCTGAGGATCCCATGTTCCTGATGGACCCCTTTGCTGTTCACCGTCAGCATAT
GAACCGTATGTTGCCAGGTGGCTTTGGATATAGCCCCTTCCTCAGCATCACAGATGGCAACATGCCAGGGACCAGGCCTG
CCAATTACAGGATGCAGGCTGGGGCTGTCTTCACCTTCGGGATGCTGGGAACGTCAAGTGGCTTCATGGACATGTTTGGG
ATGATGAACGATATGGTTGGGAACATGGAACACATGAAAGCTGGGGGAAATTGCCAGATGTTCTCATCCTCCACTGTCAT
CTCCTACTCCAATACGGGTGATAGTGCCCCCAAGGTCTACCAAGAGACATCAGAGATGCACTCAGCACCAGGCGGGATCC
GGGAGACTCTGAGGACTGTTCAAGATTCAGACAGTGGACTAGAGCCGATGTCCATTGGGCATCACATCCGAGACAGGGCC
CACATCTTCCGGCACTTCCGAAAACACTGCACTGGGGACCAGGAAGAGCGGCAGGACTATATCAACCTGGATGAGAGTGA
GGCTGCAGCATTTGACCCTGAGCAGCAGAGGGAAACATCCCACTTATGTCAGGAGCTTCCCCTGGAATTTCGAAGGCATG
AGGCGTGGGGGGGTGGGGGGGGACGAAGAGCTGAGAGGCCTCCCAGCTTGGCCATACAGGGACCTGAGGACTCCCCCTCC
AGACAGTCTCACCACTATGACTGGTGA

Alignment

ORF - retro_ogar_232 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.65 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MFRFMRDAEPEDPMFLMDPFAVHRQHMNRMLSGGFGYSPFLSITDGNMPGTRPASRRMQPGPAKQRQLQP
          MF.F...AEPEDPMFLMDPFAVHRQHMNRML.GGFGYSPFLSITDGNMPGTRPA..RMQ.G.........
Retrocopy MFHFVSNAEPEDPMFLMDPFAVHRQHMNRMLPGGFGYSPFLSITDGNMPGTRPANYRMQAGAVFTFGMLG

Parental  KSGGFMDMFGMMNDMIGNMEHMTAGGNCQTFSSSTVISYSNTGDGAPKVYQETSEMRSAPGGIRETRRTV
          .S.GFMDMFGMMNDM.GNMEHM.AGGNCQ.FSSSTVISYSNTGD.APKVYQETSEM.SAPGGIRET.RTV
Retrocopy TSSGFMDMFGMMNDMVGNMEHMKAGGNCQMFSSSTVISYSNTGDSAPKVYQETSEMHSAPGGIRETLRTV

Parental  RDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDDEWRRETSRFRQQRPLEF
          .DSDSGLE.MSIGHHIRDRAHI....R.H.TGDQEERQDYINLDESEAAAFD.E..RETS...Q..PLEF
Retrocopy QDSDSGLEPMSIGHHIRDRAHIFRHFRKHCTGDQEERQDYINLDESEAAAFDPEQQRETSHLCQELPLEF

Parental  RRHEA-AGGGGRRAEGPPRLAIQGPEESPSRQSRRYDW
          RRHEA..GGGGRRAE.PP.LAIQGPE.SPSRQS..YDW
Retrocopy RRHEAWGGGGGRRAERPPSLAIQGPEDSPSRQSHHYDW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_232 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000000758	2 retrocopies	retro_dnov_1602, retro_dnov_649,
Echinops telfairi	ENSETEG00000014471	2 retrocopies	retro_etel_1236, retro_etel_233,
Microcebus murinus	ENSMICG00000010652	1 retrocopy	retro_mmur_449,
Monodelphis domestica	ENSMODG00000018113	1 retrocopy	retro_mdom_324,
Mus musculus	ENSMUSG00000030120	1 retrocopy	retro_mmus_1090,
Otolemur garnettii	ENSOGAG00000005976	1 retrocopy	retro_ogar_232 ,
Procavia capensis	ENSPCAG00000001026	1 retrocopy	retro_pcap_326,
Ictidomys tridecemlineatus	ENSSTOG00000009908	1 retrocopy	retro_itri_1707,